View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_low_57 (Length: 232)
Name: NF15864_low_57
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 41522070 - 41522238
Alignment:
| Q |
1 |
ggcactggagatttcaatgtcgctcaaagaaaattttcttttaacggtgtcaactgcattgggaaatttgcttttttgttgtattgccacggatggactt |
100 |
Q |
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| T |
41522070 |
ggcactggagatttcaatgtcgctcaaagaaaattttcttttaaaagtgtcaactgcattgggaaatttgcttttttgttgtgttgccacggatggactt |
41522169 |
T |
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| Q |
101 |
ggaacctcattcttcacagcaattccaaaaacagctttcttttcatgtactcctcgagacatagaccca |
169 |
Q |
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| T |
41522170 |
ggaacctcattcttcacagcaattccaaaaacagctttcttttcatgtactcctcgagacatagaccca |
41522238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 41513135 - 41513304
Alignment:
| Q |
1 |
ggcactggagatttcaatgtcgctcaaagaaaattttcttttaacggtgtcaactgcattgggaaatttgcttttttgttgtattgccacggatggactt |
100 |
Q |
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| T |
41513135 |
ggcactggagatttcaatgtcgctcaaagaaaattttcttttaacagtgtcaactgcattgggaaatttgcttttttgttgtgttgccacggatggactt |
41513234 |
T |
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| Q |
101 |
ggaacctcattcttcacagcaattccaaaaacagctttcttttcatgtactcctcgagacatagacccaa |
170 |
Q |
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| T |
41513235 |
ggaacctcattcttcgcagcaaatccaaaaaaagctttcttttcatgtactcctcgagacatagacccaa |
41513304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 41506895 - 41507052
Alignment:
| Q |
6 |
tggagatttcaatgtcgctcaaagaaaattttcttttaacggtgtcaactgcattgggaaatttgcttttttgttgtattgccacggatggacttggaac |
105 |
Q |
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| T |
41506895 |
tggaggtttcactgtcgctgaaagaaaattttcttttgaccgtgtcaactgcatttgcaaacttggttttttgttgaactactagcgatggacttggata |
41506994 |
T |
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| Q |
106 |
ctcattcttcacagcaattccaaaaacagctttcttttcatgtactcctcgagacata |
163 |
Q |
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| T |
41506995 |
ctcattcttcacgacaagtccgtaaatagccttcttttcatgtactccttgagacata |
41507052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 41467404 - 41467563
Alignment:
| Q |
12 |
tttcaatgtcgctcaaagaaaattttcttttaacggtgtcaactgcattgggaaatttgcttttttgttgtatt------gccacggatggacttggaac |
105 |
Q |
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| T |
41467404 |
tttcactgtcgctgaaagaaaattttcttttgacagtgtcaactgcattgccaaatttgcttttttgttgggttgtcagggcccctgatgaacttggctc |
41467503 |
T |
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| Q |
106 |
ctcattcttcacagcaattccaaaaacagctttcttttcatgtactcctcgagacataga |
165 |
Q |
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| T |
41467504 |
ttcaatcttcacagtgattccaaaactagctttcttttcatgtattccttgaggcataga |
41467563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 41497740 - 41497809
Alignment:
| Q |
94 |
tggacttggaacctcattcttcacagcaattccaaaaacagctttcttttcatgtactcctcgagacata |
163 |
Q |
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| T |
41497740 |
tggagttggatcctcattcttcacagcaattccataaatagcattcatttcatgtactccttgggacata |
41497809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 33078088 - 33078148
Alignment:
| Q |
99 |
ttggaacctcattcttcacagcaattccaaaaacagctttcttttcatgtactcctcgaga |
159 |
Q |
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| T |
33078088 |
ttggaagctcattcttcacggcaattccagaaaaagacttcttttcatgtactcctcgaga |
33078148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 41703723 - 41703660
Alignment:
| Q |
26 |
aaagaaaattttcttttaacggtgtcaactgcattgggaaatttgcttttttgttgtattgcca |
89 |
Q |
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| T |
41703723 |
aaagaagattttcttttgactctgtcaactgcattggaaaatttgctttcttgttgtgttgcca |
41703660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 41501769 - 41501838
Alignment:
| Q |
94 |
tggacttggaacctcattcttcacagcaattccaaaaacagctttcttttcatgtactcctcgagacata |
163 |
Q |
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| T |
41501769 |
tggacttggatcctcattcttcacgacaagtccatatatagccttcttttcatgtactccttcagacata |
41501838 |
T |
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