View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15864_low_9 (Length: 578)
Name: NF15864_low_9
Description: NF15864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15864_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 21 - 429
Target Start/End: Complemental strand, 34056912 - 34056505
Alignment:
| Q |
21 |
tttgcatatcaaatcaattatactttgtttaccaaaattgtgttcatcacttattatttgtatgatttattccatgcatgacttgattgttgctttgatt |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34056912 |
tttgcatatcaaatcaattatactttgtttaccaaaattgtgttcataacttattatttgtatgatttatttcatgcatgacttgattgttgctttgatt |
34056813 |
T |
|
| Q |
121 |
gatacgatggttgagcaatatgaattaaatacattcaaaatgtgtgtaaatttatctatgaattgttgttagttcattttttggcttgccttttcgctct |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34056812 |
gatacgatggttgagcaatatgaattaaatacattcaaaatgagtctaaatttatctatgaattgttgttagttcattttttggcttgccttttcgctct |
34056713 |
T |
|
| Q |
221 |
ttcttttattgagtgtggttaaaaatttgtattcacgttcaatactttgtttgtgcttgctgaaattttagcttacattatgaaatttctagatcataat |
320 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34056712 |
ttcttttattgagtgtagtt-aaaatttgtattcacgttcaatactttgtttgtgcttgctgaaattttagcttacattatggaatttctagatcataat |
34056614 |
T |
|
| Q |
321 |
tatatccgatctgagcacctgttattgggttttcttcgcgagggtgagggtgtggcagcatgtgttcttgaaaatttgggtgctgatccaactaatattc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34056613 |
tatatccgatctgagcacctgttattgggttttcttcgcgagggtgagggtgtggcagcacctgttcttgaaaatttgggtgctgatccaactaatattc |
34056514 |
T |
|
| Q |
421 |
gtactcagc |
429 |
Q |
| |
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||||||||| |
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| T |
34056513 |
gtactcagc |
34056505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 480 - 570
Target Start/End: Complemental strand, 34056455 - 34056365
Alignment:
| Q |
480 |
ggaatgcactttcaacttaatttaatttggtgctagcagaggaggtaacttacaatccaagttttcttaacgacagattgttgatgatgtc |
570 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34056455 |
ggaatgcactttcaacttaatttaatttggtgctagcagaggaggtaacttacaatccaagttttcttaacgacagattgttgatgatgtc |
34056365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 25 - 421
Target Start/End: Original strand, 47379276 - 47379671
Alignment:
| Q |
25 |
catatcaaatcaattatactttgtttacca--aaattgtgttcatcacttattatttgtatgatttattccatgcatgacttgattgttgctttgattga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||| |||| |||||| |||||||||||||| |||| ||||||||||||||||||||| |
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| T |
47379276 |
catatcaaatcaattatactttgtttacgagaaaattgtgttcatgacttgttatttatatgatttattccaaacatgccttgattgttgctttgattga |
47379375 |
T |
|
| Q |
123 |
tacgatggttgagcaatatgaattaaatacattcaaaatgtgtgtaaatttatctatgaattgttgttagttcattttttggcttgcct--------ttt |
214 |
Q |
| |
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| ||||||||| |||| ||||||||||||||||||| || || |||| ||||||| || |||||||||||| |||||||| | |||| ||| |
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| T |
47379376 |
tctgatggttgaccaatttgaattaaatacattcaaactgagtttaaaattatctacgagttgttgttagtttattttttgacccgcctttcagcgcttt |
47379475 |
T |
|
| Q |
215 |
c-gctctttcttttatt--gagtgtggttaaaaatttgtattcacgttcaatactttgtttgtgcttgctgaaattttagcttacattatgaaatttcta |
311 |
Q |
| |
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| ||||||||||||||| ||||||||||||| ||||||| ||||||| | ||||||||||||| ||||||||| || |||||||| |
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| T |
47379476 |
ctgctctttcttttatttggagtgtggttaaatatttgta--------------tttgtttacgtttgctgaaattttggcttacattttggaatttcta |
47379561 |
T |
|
| Q |
312 |
gatcataattatatccgatctgagcacctgttattgggttttcttcgcgagggtgagggtgtggcagcatgtgttcttgaaaatttgggtgctgatccaa |
411 |
Q |
| |
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| ||| ||||||||| |||||||||||||| | |||||| ||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
47379562 |
ggtcacaattatatcggatctgagcacctgcttttgggtcttcttcgagagggtgagggtgtggccgcacgtgttcttgaaaatttgggtgctgatccaa |
47379661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 25 - 421
Target Start/End: Original strand, 47814822 - 47815202
Alignment:
| Q |
25 |
catatcaaatcaattatactttgtttaccaaaattgtgttcatcacttatt----atttgtatgatttattccatgcatgacttgattgttgctttgatt |
120 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| |||||||||||||| |||| ||||||||||||| ||||| |
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|
| T |
47814822 |
catatcaaatcaattatactttgtttatgaaaattgtgttcatgacttatttattatttatatgatttattccaaacatgccttgattgttgctatgatt |
47814921 |
T |
|
| Q |
121 |
gatacgatggttgagcaatatgaattaaatacattcaaaatgtgtgtaaatttatctatgaattgttgttagttcattttttggcttgccttttcgctct |
220 |
Q |
| |
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||| ||||||||| |||| ||||||||||||||||||| || || ||||| |||||||||| ||||| | |||||| | | |||| |||||| |
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| T |
47814922 |
gatctgatggttgaccaatttgaattaaatacattcaaagtgagtttaaat-------tgaattgttggtagttta-tttttgacccgtctttccgctct |
47815013 |
T |
|
| Q |
221 |
ttctttta--ttgagtgtggttaaaaatttgtattcacgttcaatactttgtttgtgcttgctgaaattttagcttacattatgaaatttctagatcata |
318 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||| ||| ||||||||||||||| |||||||| || ||||||||| ||| | |
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|
| T |
47815014 |
ttcttttattttgagtgtgattaaaattttgtattc--------------ctttacgcttgctgaaattttgccttacattttggaatttctaggtcaca |
47815099 |
T |
|
| Q |
319 |
attatatccgatctgagcacctgttattgggttttcttcgcgagggtgagggtgtggcagcatgtgttcttgaaaatttgggtgctgatccaactaatat |
418 |
Q |
| |
|
||||||| || ||||| ||||| | |||| | ||||||| |||||||| |||||||||||| ||||||||||||||||||| | ||||||||||||||| |
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|
| T |
47815100 |
attatattggaactgagaacctgcttttggatcttcttcgagagggtgaaggtgtggcagcacgtgttcttgaaaatttgggcgatgatccaactaatat |
47815199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 511 - 566
Target Start/End: Original strand, 47815423 - 47815478
Alignment:
| Q |
511 |
gctagcagaggaggtaacttacaatccaagttttcttaacgacagattgttgatga |
566 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
47815423 |
gctagcagaggaggtaacttacaatcctagttttcttaatgacagattgttgatga |
47815478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 511 - 566
Target Start/End: Original strand, 47379965 - 47380020
Alignment:
| Q |
511 |
gctagcagaggaggtaacttacaatccaagttttcttaacgacagattgttgatga |
566 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || ||||||||||| |||| |
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|
| T |
47379965 |
gctagcagaggaggtaacttacaatcctagttttctcaatgacagattgttaatga |
47380020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 45111824 - 45111893
Alignment:
| Q |
352 |
ttcttcgcgagggtgagggtgtggcagcatgtgttcttgaaaatttgggtgctgatccaactaatattcg |
421 |
Q |
| |
|
||||||| ||||||||||| || |||||| ||||||||||||| | || |||||||| ||||||||||| |
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|
| T |
45111824 |
ttcttcgagagggtgagggagtagcagcacgtgttcttgaaaacctaggcgctgatcctactaatattcg |
45111893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 21 - 421
Target Start/End: Original strand, 40242365 - 40242767
Alignment:
| Q |
21 |
tttgcatatcaaatcaattatactttgtttaccaaaattgtgttcatcacttattatttgtatgatttattccatgcatgacttgattgttgctttgatt |
120 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||||| ||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||||| | |
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|
| T |
40242365 |
tttgcatatctaatcaattatc--ttgtttacaaaaat-gtgttcacgacttattatttgtatgatatattccaaacatgacttgatttttgctttgagt |
40242461 |
T |
|
| Q |
121 |
gatacgatggttgagcaatatgaattaaatacattcaaaatgtgtgtaaatttatctatgaattgttgttagttcattttttggcttgccttttcgctct |
220 |
Q |
| |
|
||| | ||||| | |||| |||||||||| |||||||| | || |||||||||||||||||| || | || |||||||| | | |||| |||||| |
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|
| T |
40242462 |
gatctgttggttcaccaatttgaattaaattcattcaaagtaagttgaaatttatctatgaattggcgtgattt-attttttgtccggtctttccgctct |
40242560 |
T |
|
| Q |
221 |
t------tcttttattgagtgtggttaaaaatttgtattcacgttcaatactttgtttgtgcttgctgaaattttagcttacattatgaaatttctagat |
314 |
Q |
| |
|
| | ||||||| | ||| ||||||||| |||||||||| |||||||||| ||||||||||||||| ||| ||||||||| || ||||||||| | |
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|
| T |
40242561 |
tatgttttattttatttggagtgtttaaaaattagtattcacgtgcaatactttgcttgtgcttgctgaaagtttggcttacattttggaatttctaggt |
40242660 |
T |
|
| Q |
315 |
cataattatatccgatctgagcacctgttattgggttttcttcgcgagggtgagggtgtggcagcatgtgttcttgaaaatttgggtgctgatccaacta |
414 |
Q |
| |
|
|| ||||||||| ||||||||||| || | |||||| ||||||| |||||||| |||||||||||| |||||||||||||||||||||| || ||||||| |
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|
| T |
40242661 |
cacaattatatcggatctgagcacttgcttttgggtcttcttcgagagggtgaaggtgtggcagcacgtgttcttgaaaatttgggtgccgacccaacta |
40242760 |
T |
|
| Q |
415 |
atattcg |
421 |
Q |
| |
|
||||||| |
|
|
| T |
40242761 |
atattcg |
40242767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 567
Target Start/End: Original strand, 40243006 - 40243063
Alignment:
| Q |
511 |
gctagcagaggaggtaacttacaa-tccaagttttcttaacgacagattgttgatgat |
567 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| | |||||||||| |||||| |
|
|
| T |
40243006 |
gctagcagaggaggtaacttacaattcgtagttttcttcatgacagattgtagatgat |
40243063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 511 - 566
Target Start/End: Original strand, 17717166 - 17717221
Alignment:
| Q |
511 |
gctagcagaggaggtaacttacaatccaagttttcttaacgacagattgttgatga |
566 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
17717166 |
gctagcggaggaggtaacttacaatcctagttttcttaatgacagattgttgatga |
17717221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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