View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15865_high_5 (Length: 358)
Name: NF15865_high_5
Description: NF15865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15865_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 13020742 - 13021053
Alignment:
| Q |
19 |
tgactctggagcaacactaacttcttctttaaagcaaaa-accatcgccacctccaccatgctattccaatccatcatggattctctattaaatccttat |
117 |
Q |
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| T |
13020742 |
tgactctggagcaacactaacttcttctttaaagcaaaaaaccatcgccacctccaccatgctattccaatccatcatggattttctatcaaatcctctt |
13020841 |
T |
|
| Q |
118 |
cttttttcagctttgtctacgtgtttaacttttttggtagttcgatttctgttcggaaaattgaacaacaaaagcaatagtatgaagaagaagaagtatc |
217 |
Q |
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| T |
13020842 |
ctttttgcagctttgtctgcatctttaactcttttgttggttcaacttctgctcagaaaattgaacaacaaaagcaatagtatgaagaagaagaagtatc |
13020941 |
T |
|
| Q |
218 |
atcctgttgctggtactgtattcaatcagatgatgaacttcaacaggcttcatcattatatgactgatcttgcaaggaagtacaagacacacaggttacc |
317 |
Q |
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| T |
13020942 |
atcctgttgctggcactgtattcaatcagatgatgaacttcaacagacttcatcattatatgactgatcttgcaaggaaatacaagacatacaggttact |
13021041 |
T |
|
| Q |
318 |
taaccctttcag |
329 |
Q |
| |
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|||||||||||| |
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| T |
13021042 |
taaccctttcag |
13021053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 13073101 - 13072790
Alignment:
| Q |
19 |
tgactctggagcaacactaacttcttctttaaagcaaaaa-ccatcgccacctccaccatgctattccaatccatcatggattctctattaaatccttat |
117 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| | |
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| T |
13073101 |
tgactctggagtaacactaacttcttctttaaagcaaaaaaccatcgccatctccaccatgctattccaatccatcatggattttctatcaaatcctttt |
13073002 |
T |
|
| Q |
118 |
cttttttcagctttgtctacgtgtttaacttttttggtagttcgatttctgttcggaaaattgaacaacaaaagcaatagtatgaagaagaagaagtatc |
217 |
Q |
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| T |
13073001 |
ctttttgcagctttgtctgcatctttaactcttttgttggttcaacttctgctcagaaaattgaacaacaaaagcaataacatgaagaagaaaaagtatc |
13072902 |
T |
|
| Q |
218 |
atcctgttgctggtactgtattcaatcagatgatgaacttcaacaggcttcatcattatatgactgatcttgcaaggaagtacaagacacacaggttacc |
317 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| |||| ||||| ||| |
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| T |
13072901 |
atcctgttgctggcactgtattcaatcagatgatgaatttcaacagacttcatcattatatgactgatcttgcaaggaaatacaggacatacaggctact |
13072802 |
T |
|
| Q |
318 |
taaccctttcag |
329 |
Q |
| |
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|||||||||||| |
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| T |
13072801 |
taaccctttcag |
13072790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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