View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15866_high_1 (Length: 453)
Name: NF15866_high_1
Description: NF15866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15866_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 24 - 361
Target Start/End: Complemental strand, 4986154 - 4985817
Alignment:
| Q |
24 |
tgacacaagaatttagagctaataagagcaacaaataacaacgtattattcaatgag---atggacatcatcgcaaaaatatggtaagacacactaacct |
120 |
Q |
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| T |
4986154 |
tgacacaagaatttagagctaataagagcaacaaataacaatgtgttaa--aatggggacattaacatcat-gcaaaaatatggtaagacacactaacct |
4986058 |
T |
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| Q |
121 |
taaaaatgagactgttannnnnnngaaccttttttatgacataacagttgccataatctcaaggaatctcacctacaaagttcattgtcaacagttaggt |
220 |
Q |
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| T |
4986057 |
taaaaatgagactgttatttttttaaaccttttttatgacataacagttgccataatctcaaggaatctcaccgacaaagttcattgtcaacagttaggt |
4985958 |
T |
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| Q |
221 |
ttgaaatttgattgagactttggagctcaaaattttcaactgtcggcaagtagtgtcctatatttacattaaaattacaagagtttgtgccgcaatttaa |
320 |
Q |
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| T |
4985957 |
ttgaaatttgattgagactttggagctcaaaattttctactttcggcaagtagtgtcctatatttacattaaaattacaagagtttgtgccgcaatttaa |
4985858 |
T |
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| Q |
321 |
acaaattttgatacacaatcaagaataaaatatcttctcag |
361 |
Q |
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| T |
4985857 |
acaaattttgatatacaatcaagaataaaatatcttctcag |
4985817 |
T |
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