View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15867_low_2 (Length: 292)
Name: NF15867_low_2
Description: NF15867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15867_low_2 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 5 - 292
Target Start/End: Original strand, 7657055 - 7657343
Alignment:
| Q |
5 |
cagaactttggggtgctccaaaggcaaacaacaacaataacaaccagaacaacattccaaatcaaatgaagaacacgcatattgacaatggaaaaggtgg |
104 |
Q |
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| T |
7657055 |
cagaactttggggtgctccaaaggcaaacaacaacaataacaaccagaacaacattccaaatcaaatgaagaacatgcatattgacaatggaaaaggtgg |
7657154 |
T |
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| Q |
105 |
tggaggaaacaataacaacaaggggcaaa-gggtcctggaaataaccaaaatcagccaaagggtggtggccaacaaggacaaaatcctcaacaacagcag |
203 |
Q |
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| T |
7657155 |
tggaggaaacaataacaacaaggggcaaaagggtcctggaaataaccaaaatcagccaaagggtggtagccaacaaggacaaaatcctcaacaacagcag |
7657254 |
T |
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| Q |
204 |
cttcagcaacagttacaacagctgcaacaacttcaacatattaggggatttggagatctgaaggtgcctcaattcaaggacatgaacat |
292 |
Q |
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| T |
7657255 |
cttcagcaacagttacaacagctgcaacaacttcaacatattaaaggatttggagatctgaaggtgcctcaattcaaggacatgaacat |
7657343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 7651678 - 7651875
Alignment:
| Q |
5 |
cagaactttggggtgctccaaaggcaaacaacaacaataacaaccagaacaacattccaaatcaaatgaagaacacgcatattgacaatggaaaaggtgg |
104 |
Q |
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| T |
7651678 |
cagaactttggtgtgctccaacggagaacaacaacaataacaaccataacaacatggcaaaccagatgaagaacattcaaattgacactggaaaaggtgg |
7651777 |
T |
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| Q |
105 |
tggaggaaacaataacaacaaggggc-aaagggtcctggaaataaccaaaatcagccaaagggtggtggccaacaaggacaaaatcctcaacaacagc |
201 |
Q |
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| T |
7651778 |
tggagaaaacaataacaacaatgggcaaaaggatcctataaataaccaaaaccaaccaaagggaggtggacaacaagagcagaatcctcaacaacagc |
7651875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 7651868 - 7651942
Alignment:
| Q |
218 |
acaacagctgcaacaacttcaacatattaggggatttggagatctgaaggtgcctcaattcaaggacatgaacat |
292 |
Q |
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| T |
7651868 |
acaacagcttcaacaacttcagcagatgaaaggacttgaagatcttaaggggactcaattcaaggacatgaacat |
7651942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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