View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15867_low_4 (Length: 267)
Name: NF15867_low_4
Description: NF15867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15867_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 9584248 - 9584390
Alignment:
| Q |
13 |
aaggctgaaatgttcccaaatggcacacattatgcaaaaacggacagagaaaagtgcatcaagataacttccatcacaagcaattcacaagnnnnnnnta |
112 |
Q |
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| T |
9584248 |
aaggctgcaatgttcccaaatggcacacattatgcaaaaacggacagagaaaagtgcatcaagataacttccatcgcaagcaattcacaagaaaaaaata |
9584347 |
T |
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| Q |
113 |
tcaaaagttgaattatgaaacaatgcacctaataaaactgtac |
155 |
Q |
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| T |
9584348 |
tcaaaagttgaattagtaaacaatgcgcctaataaaactgtac |
9584390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 8777666 - 8777608
Alignment:
| Q |
112 |
atcaaaagttgaattatgaaacaatgcacctaataaaactgtacaattatctagtgaat |
170 |
Q |
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| T |
8777666 |
atcaaaagttgaattatgaaacaatgcaccaaataaaactgtacaataatctagggaat |
8777608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 9578789 - 9578832
Alignment:
| Q |
121 |
tgaattatgaaacaatgcacctaataaaactgtacaattatcta |
164 |
Q |
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| T |
9578789 |
tgaattatgaaacaatgcacctaataaaactgtacaattatcta |
9578832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 8784559 - 8784470
Alignment:
| Q |
13 |
aaggctgaaatgttcccaaatggcacacattatgcaaaaacggacagagaaaagtgcatcaagataacttccatcacaagcaattcacaa |
102 |
Q |
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| T |
8784559 |
aaggctgaaatgatcccatgtgacacacgttctgcaaaaatcgacagacaaaagtacatcaagataacttccattgcaagcagttcacaa |
8784470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 8790523 - 8790412
Alignment:
| Q |
114 |
caaaagttgaattatgaaacaatgcacctaataaaactgtacaattatctagtgaataattccattagatgtttatgccacgtcacag--ataatcataa |
211 |
Q |
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| T |
8790523 |
caaatgttgaattatgaaacaatgcaccaaacaaaactgtagaataatctagt---taaatccacgagaagtttacgcaacgttacagaaataatcataa |
8790427 |
T |
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| Q |
212 |
ctaaaaactagtaaa |
226 |
Q |
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| T |
8790426 |
ctaaaaactactaaa |
8790412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 9578830 - 9578869
Alignment:
| Q |
212 |
ctaaaaactagtaaactagtaatttcttataagcaaatga |
251 |
Q |
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| T |
9578830 |
ctaaaaactactaaactagtaatttcttataagtaaatga |
9578869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 8790635 - 8790546
Alignment:
| Q |
13 |
aaggctgaaatgttcccaaatggcacacattatgcaaaaacggacagagaaaagtgcatcaagataacttccatcacaagcaattcacaa |
102 |
Q |
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|||||||||||| |||| ||||||||||| |||||||| | |||| |||||| |||||| ||||||| ||| | |||||||||||| |
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| T |
8790635 |
aaggctgaaatgaacccatgtggcacacattctgcaaaaatcggcagacaaaagtacatcaaaataactttcattgcgagcaattcacaa |
8790546 |
T |
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