View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15868_high_1 (Length: 476)
Name: NF15868_high_1
Description: NF15868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15868_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 94 - 435
Target Start/End: Original strand, 4985817 - 4986154
Alignment:
| Q |
94 |
ctgagaagatattttattcttgattgtgtatcaaaatttgtttaaattgcggcacaaactcttgtaattttaatgtaaatataggacactacttgccgac |
193 |
Q |
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| T |
4985817 |
ctgagaagatattttattcttgattgtatatcaaaatttgtttaaattgcggcacaaactcttgtaattttaatgtaaatataggacactacttgccgaa |
4985916 |
T |
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| Q |
194 |
agttgaaaattttgagctccaaagtctcaatcaaatttcaaacctaactgttgacaatgaactttgtaggtgagattccttgagattatggcaactgtta |
293 |
Q |
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| T |
4985917 |
agtagaaaattttgagctccaaagtctcaatcaaatttcaaacctaactgttgacaatgaactttgtcggtgagattccttgagattatggcaactgtta |
4986016 |
T |
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| Q |
294 |
tgtcataaaaaaggtttnnnnnnntaacagtctcatttttaaggttagtgtgtcttaccatatttttgcatgatgatgatgtccatctcattgtaactac |
393 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||| |||| || |
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| T |
4986017 |
tgtcataaaaaaggtttaaaaaaataacagtctcatttttaaggttagtgtgtcttaccatatttttgcatgatgttaatgtccc---cattttaac-ac |
4986112 |
T |
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| Q |
394 |
attgttatttgttgctcttattagctctaaattcttgtgtca |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
4986113 |
attgttatttgttgctcttattagctctaaattcttgtgtca |
4986154 |
T |
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