View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15868_high_15 (Length: 342)
Name: NF15868_high_15
Description: NF15868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15868_high_15 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 36938459 - 36938129
Alignment:
| Q |
12 |
gggttgtgtaagaagtactgattgaattaacatcaatccccacatgatcatatgtaggatcccatgtattgacaaatgtatcaaattccacagccacaaa |
111 |
Q |
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| T |
36938459 |
gggttgtgtaagaagtactgattgaattaacatcaatccccacatgatcatatgtaggatcccatgtattgacaaatgtatcaaattccacagccacaaa |
36938360 |
T |
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| Q |
112 |
gggattttcttttgtgtaatttggagtagctaattgaacgctgctcatgagaccaataccacttccatctcttggaacaggtagtgaaaaattggggtgt |
211 |
Q |
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| T |
36938359 |
gggattttcttttgtgtaatttggagtagctaattgaacgctgctcatgagaccaataccacttccatctcttggaacaggtagtggaaaattggggtgt |
36938260 |
T |
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| Q |
212 |
gccaaatagaaggtgattccatctgaatgatcggttttgttgagggtgttgatagtaaatgagaaacgagtagtaaaatccgtgacttcactcgtgttta |
311 |
Q |
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| T |
36938259 |
gccaaatagaaggtgattccatctgaatgatcggttttgttgagggtgttgatagtaaatgagaaacgagtagtaaaatccgtgacttcactcgtgttta |
36938160 |
T |
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| Q |
312 |
tgttccaaagatgaaatagttttgaatatgt |
342 |
Q |
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| T |
36938159 |
tgttccaaagatgaaatagttttgaatatgt |
36938129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 29 - 342
Target Start/End: Complemental strand, 36948686 - 36948376
Alignment:
| Q |
29 |
ctgattgaattaacatcaatccccacatgatcatatgtaggatcccatgtattgacaaatgtatcaaattccacagccacaaagggattttcttttgtgt |
128 |
Q |
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| T |
36948686 |
ctgatagaattaacatcaatcccaacatgatcatatttaggatcccagtcattaacaaatgtatcaaattccacagctacaaatggattttcttttgtgt |
36948587 |
T |
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| Q |
129 |
aatttggagtagctaattgaacgctgctcatgagaccaataccacttccatctctt-ggaacaggtagtgaaaaattggggtgtgccaaatagaaggtga |
227 |
Q |
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| T |
36948586 |
aatttggattactcaattgaacacggctcgctagaccgataccacttccatctatttgggaca--tagg--aaaattggggcgtgccaaatagaaggtga |
36948491 |
T |
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| Q |
228 |
ttccatctgaatgatcggttttgttgagggtgttgatagtaaatgagaaacgagtagtaaaatccgtgacttcactcgtgtttatgttccaaagatgaaa |
327 |
Q |
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| T |
36948490 |
tgccatctccatgataacttttgttgggggtgttgatagaaaatgagaaacgagtagtgaaatctgtgacttcacttgtgttaatgttccaaagatgaaa |
36948391 |
T |
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| Q |
328 |
tagttttgaatatgt |
342 |
Q |
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| T |
36948390 |
caattttgaatatgt |
36948376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 29 - 342
Target Start/End: Complemental strand, 36958820 - 36958510
Alignment:
| Q |
29 |
ctgattgaattaacatcaatccccacatgatcatatgtaggatcccatgtattgacaaatgtatcaaattccacagccacaaagggattttcttttgtgt |
128 |
Q |
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| T |
36958820 |
ctgatagaattaacatcaatcccaacatgatcatagttaggatcccattcattaacaaatgtatcaaattccacagctacaaatggattttcttttgtgt |
36958721 |
T |
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| Q |
129 |
aatttggagtagctaattgaacgctgctcatgagaccaataccacttccatctctt-ggaacaggtagtgaaaaattggggtgtgccaaatagaaggtga |
227 |
Q |
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| T |
36958720 |
aatctggattactcaattgaacaaggctcgcaagaccgattccgcctccatatatttgggacatg----ggaaaattggggtgtgccaaatagaaggtca |
36958625 |
T |
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| Q |
228 |
ttccatctgaatgatcggttttgttgagggtgttgatagtaaatgagaaacgagtagtaaaatccgtgacttcactcgtgtttatgttccaaagatgaaa |
327 |
Q |
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| T |
36958624 |
tgccatctgcatgatgggttttgttgggggtgttgatagtaaatgagaaacgagtattgaaatctgtgacttcgcttgtttttatgtcccaaagatgaaa |
36958525 |
T |
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| Q |
328 |
tagttttgaatatgt |
342 |
Q |
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| T |
36958524 |
caattttgaatatgt |
36958510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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