View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15868_high_19 (Length: 325)
Name: NF15868_high_19
Description: NF15868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15868_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 38754243 - 38753923
Alignment:
| Q |
1 |
agaaatatagaataacaaggattttcttgatcaagtttatgaaaatttgactgtagaggacttgagacttacatcgaacgaaatcactgaaataactttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38754243 |
agaaatatagaataacaaggattttcttgatcaagtttatgaaaatttgactgtagaggacttgagacttacatcgaacgaaatcactgaaataactttt |
38754144 |
T |
|
| Q |
101 |
tcttttcccttgtgaaacacaattttcaagcatttgttggatgtctaattatctacacgtcacaacttaatctgatagtgagatgcatttcagctttatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38754143 |
tcttttcccttgtgaaacacaattttcaagcatttgttggatgtctaattatctacacgtcacaacataatctgatagtgagatgcatttcagctttatg |
38754044 |
T |
|
| Q |
201 |
tctattcaagaacctatgcacttggacaaatggtgcaatctgcaagctcatcagctggacttcggactatcaaacgtgttgatcaaactttgcaggaact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38754043 |
tctattcaagaacctatgcacttggacaaatggtgcaatctgcaagctcatcagctggacttcggactatcaaacgtgttgatcaaactttgcaggaact |
38753944 |
T |
|
| Q |
301 |
tggggtttgtctgtgctcctc |
321 |
Q |
| |
|
|||||||||| ||| |||||| |
|
|
| T |
38753943 |
tggggtttgtttgttctcctc |
38753923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 311
Target Start/End: Complemental strand, 45016551 - 45016410
Alignment:
| Q |
170 |
atctgatagtgagatgcatttcagctttatgtctattcaagaacctatgcacttggacaaatggtgcaatctgcaagctcatcagctggacttcggacta |
269 |
Q |
| |
|
|||||||||||||| ||||||||| ||| |||| || || |||||||| | |||||||||||| || ||| | || | |||||| ||||||||| |
|
|
| T |
45016551 |
atctgatagtgagaaatgtttcagcttcgtgtatatttgaggacatatgcactcgagcaaatggtgcaagcttcaaacgcaactgctggagttcggacta |
45016452 |
T |
|
| Q |
270 |
tcaaacgtgttgatcaaactttgcaggaacttggggtttgtc |
311 |
Q |
| |
|
||||||| ||||| ||||| ||||| || || |||||||||| |
|
|
| T |
45016451 |
tcaaacgggttgagcaaacattgcaagatctcggggtttgtc |
45016410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University