View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15868_high_20 (Length: 322)
Name: NF15868_high_20
Description: NF15868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15868_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 26 - 290
Target Start/End: Complemental strand, 44575558 - 44575294
Alignment:
| Q |
26 |
catcatcaactcttgtttttgacaaattcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaactgcaaattgggaaaaatggaag |
125 |
Q |
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| T |
44575558 |
catcatcaactcttgtttttgacaaattcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaag |
44575459 |
T |
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| Q |
126 |
agaacattttgaagtgttgagttcttaaccaataattgccagagaaatggagatactttatttttaagttaggacatacaacaaaatccatcaaagaaat |
225 |
Q |
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| T |
44575458 |
agaacattttgaagtgttgagttcttaaccaataattgccagacaaatggagatactttatttttaagttaggacatacaacaaaatccatcaaagaaat |
44575359 |
T |
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| Q |
226 |
agaattattattggtttgtgttaattgcaagaagcaatgatagctcatgagggtgaggtttgggg |
290 |
Q |
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| T |
44575358 |
agaattattattggtttgtgttaattgcaagaagcaatgatagctcatgagggtgaggtttgggg |
44575294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 185
Target Start/End: Complemental strand, 32785711 - 32785575
Alignment:
| Q |
49 |
aaattcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaactgcaaattgggaaaaatggaagagaacattttgaagtgttgagtt |
148 |
Q |
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| T |
32785711 |
aaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattggaaaaaatagaagaaaacatcctgatgctttcatct |
32785612 |
T |
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| Q |
149 |
cttaaccaataattgccagagaaatggagatacttta |
185 |
Q |
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| T |
32785611 |
cttaaccaataattgcgagccaaatggagaaacttta |
32785575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 1037597 - 1037524
Alignment:
| Q |
52 |
ttcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaactgcaaattgggaaaaatggaag |
125 |
Q |
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| T |
1037597 |
ttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaag |
1037524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 18315171 - 18315121
Alignment:
| Q |
87 |
agctcaaatcaagtaactgcaaattgggaaaaatggaagagaacattttga |
137 |
Q |
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| T |
18315171 |
agctcaaatcaagcaactgcaaattggggaaaatggaagaaaatattttga |
18315121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 12121371 - 12121317
Alignment:
| Q |
71 |
gatatgtaatagcaaaagctcaaatcaagtaactgcaaattgggaaaaatggaag |
125 |
Q |
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| T |
12121371 |
gatatgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaacggaag |
12121317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 55908661 - 55908588
Alignment:
| Q |
52 |
ttcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaactgcaaattgggaaaaatggaag |
125 |
Q |
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| T |
55908661 |
ttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaag |
55908588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 8187005 - 8186913
Alignment:
| Q |
71 |
gatatgtaatagcaaaagctcaaatcaagtaactgcaaattgggaaaaatggaagagaacattttgaagtgttgagttcttaaccaataattg |
163 |
Q |
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| T |
8187005 |
gatatgtcatagcaatgactcaaatcaagcaactgcaaattggggaataaggaagataacatttcgaggttttcattacttaaccaacaattg |
8186913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 41901435 - 41901390
Alignment:
| Q |
88 |
gctcaaatcaagtaactgcaaattgggaaaaatggaagagaacatt |
133 |
Q |
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| T |
41901435 |
gctcaaatcaagcagctgcaaattggggaaaatggaagcgaacatt |
41901390 |
T |
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