View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15868_high_21 (Length: 317)
Name: NF15868_high_21
Description: NF15868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15868_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 4074500 - 4074183
Alignment:
| Q |
11 |
cacagagattgacaaatcgatagtagaagttcatatcccaactggaacaatcatttgctagacttaatttacctcctg----------gaagcacctaaa |
100 |
Q |
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| T |
4074500 |
cacagagattgacaaatcgataggagaagttcatatcccaactggaacaatcatttgctagacttaatttacctcctgaccaaactttgaagcacctaaa |
4074401 |
T |
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| Q |
101 |
gttgaagtttttagaagcatagatgctccctttttt-caccaactatcacatctaggaaaactgaatgtaaagtagaagacaacaattttaatattgtat |
199 |
Q |
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| T |
4074400 |
gttgaagtttttagaagcatagatgctccctttttttcaccaactatcacatctaggaaaactgaatgtaaagtagaagacaacaattttgatattgtat |
4074301 |
T |
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| Q |
200 |
ttcatgaacaatttggaccccaaattatattttgaattattatataagaaagtttatacctctttctccttcttccttaaccatttcttctaattgatag |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4074300 |
ttcatgaacaatttggaccccaaattatattttgaattattatataagaaagtttatacttctttctccttcttccttaaccatttcttctaattgatat |
4074201 |
T |
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| Q |
300 |
agagtgtcaagttgtttc |
317 |
Q |
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|||||||||||||||||| |
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| T |
4074200 |
agagtgtcaagttgtttc |
4074183 |
T |
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