View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15868_high_4 (Length: 428)
Name: NF15868_high_4
Description: NF15868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15868_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 30 - 396
Target Start/End: Original strand, 27499062 - 27499428
Alignment:
| Q |
30 |
catcaaatttttatcaaggagccaacaactggatttgattttggtaaatctataagtttaaatgtgaaactagtaagcatccttttctagagtaaatcca |
129 |
Q |
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| T |
27499062 |
catcaaatttttatcaaggagccaacaactggattcgattttggtaaatctataagtttaaatgtgaaactagtaagtatcctgttctagagtaaatcca |
27499161 |
T |
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| Q |
130 |
atctttcaaatgaccaaacaaataaaaacaaaccacgtcatcctaacctgacccctgtatcctcatttttaattccaaagttataattcataaaagcacc |
229 |
Q |
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| T |
27499162 |
atctttcaaatgaccaaacaaataaaaacaaaccaagtcatcctaacctgacccctgtatcctcatttttaattccaaagttataattcataaaagcacc |
27499261 |
T |
|
| Q |
230 |
tcctcgataaatctgaactaggagaaatgaatatacagcgatacagattgggctattaaaatgaaactaaatatttctactaaccaccatgttaatgcta |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27499262 |
tcctcgataaatctgaactaggagaaatgaatatacagcgatacagattgggctattaaaatgaaactaaatatttctactaaacaccatgttaatgcta |
27499361 |
T |
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| Q |
330 |
taattagatttccatggcagtaacaatagcttcaaacagcctccttgcatctgtgccaggttcaggt |
396 |
Q |
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| T |
27499362 |
taattagatttccatggcagtaacagtagcttcaaacagcctccttgcatctgtgccaggttcaggt |
27499428 |
T |
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