View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1586_high_12 (Length: 291)

Name: NF1586_high_12
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1586_high_12
NF1586_high_12
[»] chr2 (1 HSPs)
chr2 (1-291)||(44956334-44956624)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 44956334 - 44956624
Alignment:
Q  1 catgttggtgatgacaactcatgagtacagaaggtacaattgcaaacaatgtgatgacaatttgagcttttgcaaatggaactaaatgagaatatcttcg 100  Q
    ||||||||||||||||||||| || |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44956334 catgttggtgatgacaactcaagattcaagaaggtacaattgcaaacaatgtgatgacaatttgagcttttgcaaatggaactaaatgagaatatctttg 44956433  T
Q  101 aatatttcaatagaataacagtggtgggaaaccaggtgaagatgtgtatgatcaaaaaatggtgaacaaggtaatgcacactctttcttgaaaatttggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44956434 aatatttcaatagaataacagtggtgggaaaccaggtgaagatgtgtatgatcaaaaaatggtgaacaaggtaatgcacactctttcttgaaaatttggt 44956533  T
Q  201 tacatatatagaagttgcaattgaggaatcaagggacttgtaagttatgaaagttgaggaatttcagtgtgttcttttgaagctcagaaac 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  44956534 tacatatatagaagttgcaattgaggaatcaagggacttgtaagttatgaaagttgaggaatttcagtgtgttctttggaagctcataaac 44956624  T

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