View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1586_high_20 (Length: 237)
Name: NF1586_high_20
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1586_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33887501 - 33887720
Alignment:
| Q |
1 |
ttggaaaagggaaactcatttcgagaatacagaattttgagaaacaaacctctggatctaacggtgtagtgtcgagctccttaacgtcatcgtcgtcggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
33887501 |
ttggaaaagggaaactcatttcgagaatacagaattttgagaaacaaacctctggatctaacggtgtagtgtcgagctccttaacgtc------gttggt |
33887594 |
T |
|
| Q |
101 |
ttcagtaaccttgccggagctgcagcaagtcaacagcggagtgtgatcggagcgaaactcgtcagaagccgacgaaagaatattttctgcagcttcagcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33887595 |
ttcagtaaccttgccggagctgcagcaagtcaacagcggagtgtgatccgagcgaaactcgtcggaagccgacgaaagaatattttctgcagcttcagct |
33887694 |
T |
|
| Q |
201 |
agcgagtttggtagttgatgcttcat |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
33887695 |
agcgagtttggtagttgatgcttcat |
33887720 |
T |
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