View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1586_high_24 (Length: 206)
Name: NF1586_high_24
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1586_high_24 |
 | |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 1758850 - 1759055
Alignment:
| Q |
1 |
taatagtttttatggttaacaattgatttttgttgttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgttt |
100 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1758850 |
taatagtttttatgctgaacaattcatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgttt |
1758949 |
T |
|
| Q |
101 |
aagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaa |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1758950 |
aagccttactttcaaatgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaa |
1759049 |
T |
|
| Q |
201 |
ttgatt |
206 |
Q |
| |
|
|||||| |
|
|
| T |
1759050 |
ttgatt |
1759055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 26 - 206
Target Start/End: Complemental strand, 38867046 - 38866866
Alignment:
| Q |
26 |
atttttgttgttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt |
125 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| |
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|
| T |
38867046 |
atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccttactttcaagtgtccatgt |
38866947 |
T |
|
| Q |
126 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgatt |
206 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||| ||| |||||||||| |
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|
| T |
38866946 |
ggcaagggatatgaggttctaatatgtgcaaacaattgttactacaagttggtctagaagaatcaaaatgtttaattgatt |
38866866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 29426336 - 29426500
Alignment:
| Q |
26 |
atttttgttgttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt |
125 |
Q |
| |
|
|||| |||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||||| |
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|
| T |
29426336 |
atttatgtttttgtaggatgaatcgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaaaccttactttcaagtgtccatgt |
29426435 |
T |
|
| Q |
126 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatca |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || | || |||||||| |
|
|
| T |
29426436 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtaaaagaatca |
29426500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 29250423 - 29250617
Alignment:
| Q |
1 |
taatagtttttatggttaacaattgatttttgttgttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgttt |
100 |
Q |
| |
|
|||| ||||||||| | ||||||| |||| |||| |||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
29250423 |
taattgtttttatgctgaacaattcatttatgtttttgtaggatgaattgggaaatgattataaagaagctgttagtgtggagtggattgataagtgttt |
29250522 |
T |
|
| Q |
101 |
aagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatg |
195 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||| || | || ||||||||||||| |
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|
| T |
29250523 |
gagccttactttcaagtgtccatgcggcaagggatatgaggttctaatatgtgctaacaattgctactacaagttggtttacaagaatcagtatg |
29250617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 29169377 - 29169547
Alignment:
| Q |
36 |
ttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgtggcaagggat |
135 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
29169377 |
ttgtaggatgaattgggaaatgattatgaagaagctgtcagtgtagaatggattgataagtgtttaagccttactttcaggtgcccatgtggcaagggat |
29169476 |
T |
|
| Q |
136 |
atgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgatt |
206 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| || ||||||||||||| |||| |||||||||| |
|
|
| T |
29169477 |
atgagattctaatatgtgcaaacaattgttactacaagttggtctagaagaatcattatgtttaattgatt |
29169547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 29566696 - 29566527
Alignment:
| Q |
21 |
aattgatttttgttgttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatc |
120 |
Q |
| |
|
|||| |||| |||| ||| |||||||||||| ||||||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||| | || |
|
|
| T |
29566696 |
aattcatttatgtttttgcaggatgaattgggaaatgattatgaagaagctgttagtgtagaatggattgatgagtgtttaagccttactttcaagtgtc |
29566597 |
T |
|
| Q |
121 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatca |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || |||||||| |
|
|
| T |
29566596 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtaaaagaatca |
29566527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 32432111 - 32432284
Alignment:
| Q |
21 |
aattgatttttgttgttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatc |
120 |
Q |
| |
|
|||| |||||||| |||||||||| |||| | | ||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||| | | || |
|
|
| T |
32432111 |
aattcatttttgtgtttgtaggatggtttggcagaagattatgaagaagctgttagtgtagagtggattgaaaagtgtttaagccttatttttaggtgtc |
32432210 |
T |
|
| Q |
121 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtat |
194 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
32432211 |
catgtggcaaggggtatgaggttctaatatgtgcaaacaattgttactacaagttggtgtagaagaatcagtat |
32432284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 27463028 - 27463226
Alignment:
| Q |
1 |
taatagtttttatggttaacaattgatttttgttgttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgttt |
100 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27463028 |
taatagtttttatgctgaacaattgatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagtgttt |
27463127 |
T |
|
| Q |
101 |
aagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgctta |
199 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
27463128 |
aagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgctta |
27463226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 27483400 - 27483598
Alignment:
| Q |
1 |
taatagtttttatggttaacaattgatttttgttgttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgttt |
100 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27483400 |
taatagtttttatgctgaacaattgatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagtgttt |
27483499 |
T |
|
| Q |
101 |
aagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgctta |
199 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
27483500 |
aagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgctta |
27483598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 27471627 - 27471825
Alignment:
| Q |
1 |
taatagtttttatggttaacaattgatttttgttgttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgttt |
100 |
Q |
| |
|
|||||||||||||| | |||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27471627 |
taatagtttttatgctgaacaattgatttttatttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagtgttt |
27471726 |
T |
|
| Q |
101 |
aagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgctta |
199 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
27471727 |
aagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgctta |
27471825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 27519996 - 27519798
Alignment:
| Q |
1 |
taatagtttttatggttaacaattgatttttgttgttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgttt |
100 |
Q |
| |
|
|||||||||||||| | |||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27519996 |
taatagtttttatgctgaacagttcatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagtgttt |
27519897 |
T |
|
| Q |
101 |
aagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgctta |
199 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
27519896 |
aagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgctta |
27519798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 18987750 - 18987955
Alignment:
| Q |
1 |
taatagtttttatggttaacaattgatttttgttgttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgttt |
100 |
Q |
| |
|
|||||||||||||| | |||||||| |||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18987750 |
taatagtttttatgctgaacaattgttttttgtttttgtaggatcaattgggaaatgattatgaagaagctgttagtgtggagtggattgataagtgttt |
18987849 |
T |
|
| Q |
101 |
aagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaa |
200 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
18987850 |
aagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgcttaa |
18987949 |
T |
|
| Q |
201 |
ttgatt |
206 |
Q |
| |
|
| |||| |
|
|
| T |
18987950 |
tagatt |
18987955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 25520054 - 25520223
Alignment:
| Q |
26 |
atttttgttgttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt |
125 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
25520054 |
atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtagagtgggttgataagtgtttaagccttactttcaagtgtccatgt |
25520153 |
T |
|
| Q |
126 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatg |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |||| |
|
|
| T |
25520154 |
agcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtagaagaatcactatg |
25520223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 1700074 - 1699948
Alignment:
| Q |
57 |
gattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaa |
156 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||| ||| || || |||||||||||||||| | ||||||||||||||| ||||||||||| || | || | |
|
|
| T |
1700074 |
gattttgaagaagctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagcca |
1699975 |
T |
|
| Q |
157 |
acaattgttactacaagctgatctaga |
183 |
Q |
| |
|
|||||||||| |||||| || |||||| |
|
|
| T |
1699974 |
acaattgttattacaagttggtctaga |
1699948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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