View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1586_high_25 (Length: 203)
Name: NF1586_high_25
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1586_high_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 5240304 - 5240131
Alignment:
| Q |
16 |
aaaatatatcaagatatgcaaaaacaagcataaagcatgattaaaatatatcaagctatacaaaaacaggcataaagcatgaaatatgttaccttcttgt |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5240304 |
aaaatatatcaagatatacaaaaacaagcataaagcatgattaaaatatatcaagatatacaaaaacaggcataaagcatgaaatatgttaccttcttgt |
5240205 |
T |
|
| Q |
116 |
tatgacaacaaagtatatgcccttgtggtccataatcagcacaacaacaaaaaagtttcatctttataattagt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5240204 |
tatgacaacaaagtatatgcccttgtggtccataatcagcacaacaacaaaaaagtttcatctttataattagt |
5240131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 5240307 - 5240265
Alignment:
| Q |
55 |
attaaaatatatcaagctatacaaaaacaggcataaagcatga |
97 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
5240307 |
attaaaatatatcaagatatacaaaaacaagcataaagcatga |
5240265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University