View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1586_high_5 (Length: 458)
Name: NF1586_high_5
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1586_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 16843685 - 16843256
Alignment:
| Q |
16 |
ataaagaaatgaacttcctctgcaacaacacataatatagtgtttattttcttatatctaagaatatacagaaatatttcacaaaggaagcaaacggtca |
115 |
Q |
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| T |
16843685 |
ataaagaaatgaacttcctctgcaacaacacataatatagtgtttattttcttatatctaagaatatacagaaatatttcacaaaggaagcaaacggtca |
16843586 |
T |
|
| Q |
116 |
gtgactataatcaaggaggactttagggtcaagctatttttcaaaataaacagggttagaaaatctaagaccatttacaaaatgtcataggtttatgata |
215 |
Q |
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| T |
16843585 |
gtgactataatcaaggaggactttagggtcaagctatttttcaaaataaacagggttagaaaatccaagaccatttacaaaatgtcataggtttatgata |
16843486 |
T |
|
| Q |
216 |
ttcataattttatctgctttgtccatagtgaccatttaacagcttctaagaacttatcgtttcgcttcagtgcattgataagattagtgtaggttgtctc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16843485 |
ttcataattttatctgctttgtccatagtgaccatttaacagcttctaagaacttatcgtttcgcttcagtgcattgataagattagtgtaggttgtctc |
16843386 |
T |
|
| Q |
316 |
gtcaagttctattccattttttctcatttccttgatcaattctacagcctcttcatccactccagcaatcccatatgccttaatcaatgtgttatagctg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16843385 |
gtcaagttctattccattttttctcatttccttgatcaattctacagcctcttcatccactccagcaatcccatatgccttaatcaatgtgttatagctg |
16843286 |
T |
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| Q |
416 |
caaaaatcaggtcggagtccacattcattc |
445 |
Q |
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| T |
16843285 |
caaaaatcaggtcggagtccacattcattc |
16843256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 24210955 - 24210522
Alignment:
| Q |
16 |
ataaagaaatgaacttcctctgcaacaacacata----atatagtgtttattttcttatatctaagaatatacagaaatatttcacaaaggaagcaaacg |
111 |
Q |
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|
||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | |
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| T |
24210955 |
ataaagaaatgaacttcctttgcaacaacacatataatatacagtgtttattttcttatttctcagaatatacagaaatatttcacaaaggaagcaaaag |
24210856 |
T |
|
| Q |
112 |
gtcagtgactataatcaaggaggactttagggtcaagctatttttcaaaataaacagggttagaaaatctaagaccatttacaaaatgtcataggtttat |
211 |
Q |
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|||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |
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| T |
24210855 |
gtcagtgactgtaatcaagtaggactctagggtcaagctattcttcaaaataaacagggttagaaaatccaagaccgtttacaaaatgccataggtttat |
24210756 |
T |
|
| Q |
212 |
gatattcataattttatctgctttgtccatagtgaccatttaacagcttctaagaacttatcgtttcgcttcagtgcattgataagattagtgtaggttg |
311 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24210755 |
gatattcataattttatctgcttcatccatagtgaccatttaacagcttctaagaacttatcgtttcgcttcagtgcattgataagattggtgtaggttg |
24210656 |
T |
|
| Q |
312 |
tctcgtcaagttctattccattttttctcatttccttgatcaattctacagcctcttcatccactccagcaatcccatatgccttaatcaatgtgttata |
411 |
Q |
| |
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||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||| ||||||||||||||||| |||||||| |
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| T |
24210655 |
tctggtcaggttctattccattttttctcatttccttgatcaattcaacagcctcttcaaccattccagcaattccatatgccttaatcaacgtgttata |
24210556 |
T |
|
| Q |
412 |
gctgcaaaaatcaggtcggagtccacattcattc |
445 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |
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|
| T |
24210555 |
gctgcacaaatcaggtcggagtccacattcattc |
24210522 |
T |
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