View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1586_high_7 (Length: 417)
Name: NF1586_high_7
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1586_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 37409313 - 37409695
Alignment:
| Q |
1 |
tgaagttaatgtacactttctctaaactgttttctattatccattcataatttataagcctcactttcattggctataccattctaattcttatcttcaa |
100 |
Q |
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| T |
37409313 |
tgaagttaatgtacactttctctaaactgttttctattatccattcataatttataagcctcactttcattggctatacc---------------ttcaa |
37409397 |
T |
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| Q |
101 |
acaagaaaagaaaattatcacaatggcaagtaaacaacatagatgtaaccaatgtggaacaatgctggtggttccaatagaagtccaagcctttaaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37409398 |
acaagaaaagaaaattatcacaatggcaagtaaacaacatagatgtaaccaatgtggaacaatgctggtggttccaatagaagtccaagcctttaaatgt |
37409497 |
T |
|
| Q |
201 |
tcaatgtgcaatggcatcacacatgttcaatccataggtacaatgaatcaagcccataactctcttaatcatattgcaggtctatttagaggcttcatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37409498 |
tcaatgtgcaatggcatcacacatgttcaatccata---------aatcaagcctataactctcttaatcatattgcaggtctatttagaggcttcatga |
37409588 |
T |
|
| Q |
301 |
atactataacaactagctcagcaattaacagcaactcaagtaattatgggacaactcattttgggtattatcatcagcctcagccactaaggccttcata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37409589 |
atactataacaactagctcagcaattaacagcaactcaagtaattatgggacaactcattttgggtattatcatcagcctcagccactaaggccttcata |
37409688 |
T |
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