View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1586_high_9 (Length: 328)
Name: NF1586_high_9
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1586_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 31430771 - 31431079
Alignment:
| Q |
1 |
tgttcatgatttctcataggtctatgtataatgcagaattattttgcagcataagtctgttcatgatcttcctcaatgttgcgtgaggtttcccttttag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31430771 |
tgttcatgatttctcataggtctatgtataatgcagaattagtttgcagcataagtctgttcatgatcttcctcaatgttgcgtgaggtttcccttttag |
31430870 |
T |
|
| Q |
101 |
cgttatatttatgcctaatgtatctgatatgggtacaaggctatgttaccttttcataaattaacctagcaaaagtgaacccatatggctttcctttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31430871 |
cgttatatttatgcctaatgtatctgatatgggtacaaggctatgttaccttttcataaattaacctagcaaaagtgaacccatatggctttcctttcaa |
31430970 |
T |
|
| Q |
201 |
atgtgtagcatgttgaagaatttgaggttcttcagatgattgcttgttaagcatttcagctgtggtgcttataatgttgttttatttatcaaatatttga |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31430971 |
atgtgtagcatgttgaagaatttgaggttcttcagatgattgcttgttaagcatttcagctgtggtgcttataatgttgctttatttatcaaatatttga |
31431070 |
T |
|
| Q |
301 |
ccagctagg |
309 |
Q |
| |
|
||||||||| |
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|
| T |
31431071 |
ccagctagg |
31431079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 31431897 - 31431994
Alignment:
| Q |
25 |
tgtataatgcagaattattttgcagcataagtctgttcatgatcttcctcaatgttgcgtgaggtttcccttttagcgttatatttatgcctaatgta |
122 |
Q |
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|||||||| || ||| | |||| ||||||||| |||| ||||||||| | ||||| |||| |||||| || |||| |||| ||||||||||||||| |
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| T |
31431897 |
tgtataatacaaaatcagtttgtagcataagtttgttattgatcttcccgattgttgtgtgatgtttccattatagcattatctttatgcctaatgta |
31431994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 41283124 - 41282984
Alignment:
| Q |
1 |
tgttcatgatttctcataggtctatgtataatgcagaattattttgcagcataagtctgttcatgatcttcctcaatgttgcgtgaggtttcccttttag |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||| |
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| T |
41283124 |
tgttcatgatttctcataggtctctgtataatgccaaattagtttgcagcataagtctgttcatcatcttcctcattgttgtgtgatgtttcccttttag |
41283025 |
T |
|
| Q |
101 |
cgttatatttatgcctaatgtatctgatatgggtacaaggc |
141 |
Q |
| |
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| |||||||||| |||||||||||||||||||| ||||||| |
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| T |
41283024 |
cattatatttattcctaatgtatctgatatgggcacaaggc |
41282984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 41282978 - 41282905
Alignment:
| Q |
190 |
tttcctttcaaatgtgtagcatgttgaagaatttgaggttcttcagatgattgcttgttaagcatttcagctgt |
263 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41282978 |
tttcctttcaaatgtgtggcatgttgaagaatttgaggttctttagatgattgcttgttaagcatttcagctgt |
41282905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 41282880 - 41282835
Alignment:
| Q |
261 |
tgtggtgcttataatgttgttttatttatcaaatatttgaccagct |
306 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
41282880 |
tgtggtgcttatagcgttgctttatttatcaaatatttgaccagct |
41282835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 121 - 263
Target Start/End: Complemental strand, 37549618 - 37549471
Alignment:
| Q |
121 |
tatctgatatgggtacaaggctatgttaccttttcataaattaacctagcaaaagtgaacccatatggc-----tttcctttcaaatgtgtagcatgttg |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |||||||| |
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| T |
37549618 |
tatctgatataagtacaaggctatgttaccttttcataaattaacctagtgaaagtgaacccatatggcattgttttcctttcaaaggtgtggcatgttg |
37549519 |
T |
|
| Q |
216 |
aagaatttgaggttcttcagatgattgcttgttaagcatttcagctgt |
263 |
Q |
| |
|
|||||||| ||||||||| |||||||| ||||||| |||||||||||| |
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| T |
37549518 |
aagaatttaaggttcttccgatgattgtttgttaatcatttcagctgt |
37549471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 121 - 263
Target Start/End: Complemental strand, 32848574 - 32848427
Alignment:
| Q |
121 |
tatctgatatgggtacaaggctatgttaccttttcataaattaacctagcaaaagtgaacccatatggc-----tttcctttcaaatgtgtagcatgttg |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |||||||| |
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| T |
32848574 |
tatctgatataagtacaaggctatgttaccttttcataaattaacctagtgaaagtgaacccatatggcattgttttcctttcaaaggtgtggcatgttg |
32848475 |
T |
|
| Q |
216 |
aagaatttgaggttcttcagatgattgcttgttaagcatttcagctgt |
263 |
Q |
| |
|
|||||||| ||||||||| |||||||| ||||||| |||||||||||| |
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|
| T |
32848474 |
aagaatttaaggttcttccgatgattgtttgttaatcatttcagctgt |
32848427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 32848894 - 32848767
Alignment:
| Q |
1 |
tgttcatgatttctcataggtctatgtataatgcagaattattttgcagcataagtctgttcatgatcttcctcaatgttgcgtgaggtttcccttttag |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |
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| T |
32848894 |
tgttcatgatttctcatagatctttgtataatggcaaattagtttgcagcataagtctgttcatgatcttcctcattgttgtgtgatgtttcccttttag |
32848795 |
T |
|
| Q |
101 |
cgttatatttatgcctaatgtatctgat |
128 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
32848794 |
tgttatatttatgcctaatgtatctgat |
32848767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 11430310 - 11430437
Alignment:
| Q |
1 |
tgttcatgatttctcataggtctatgtataatgcagaattattttgcagcataagtctgttcatgatcttcctcaatgttgcgtgaggtttcccttttag |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |
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|
| T |
11430310 |
tgttcatgatttctcatagatctttgtataatggcaaattagtttgcagcataagtctgttcatgatcttcctcattgttgtgtgatgtttcccttttag |
11430409 |
T |
|
| Q |
101 |
cgttatatttatgcctaatgtatctgat |
128 |
Q |
| |
|
|||||||||||||||||| |||||||| |
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|
| T |
11430410 |
tgttatatttatgcctaatttatctgat |
11430437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 121 - 263
Target Start/End: Original strand, 11430629 - 11430776
Alignment:
| Q |
121 |
tatctgatatgggtacaaggctatgttaccttttcataaattaacctagcaaaagtgaacccatatggc-----tttcctttcaaatgtgtagcatgttg |
215 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |||||||| |
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|
| T |
11430629 |
tatctgatatgagtacaaggctatgttaccttttcataaattaacctagtgaaagtgaacccatatggcattgttttcctttcaaaggtgtggcatgttg |
11430728 |
T |
|
| Q |
216 |
aagaatttgaggttcttcagatgattgcttgttaagcatttcagctgt |
263 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||| ||||||| |||| |
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|
| T |
11430729 |
aagaatttaaggttctttcgatgattgtttgttaatcatttcaactgt |
11430776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 11430801 - 11430846
Alignment:
| Q |
261 |
tgtggtgcttataatgttgttttatttatcaaatatttgaccagct |
306 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||| ||||| |
|
|
| T |
11430801 |
tgtggtgcttatatcgttgctttatttatcaaatatttgatcagct |
11430846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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