View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1586_low_12 (Length: 312)
Name: NF1586_low_12
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1586_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 72 - 302
Target Start/End: Complemental strand, 8080300 - 8080071
Alignment:
| Q |
72 |
tatatcaaaatcaccaaactcaggatacacatagcattatcgtgatttcatataagcaaacattcaacataccacttaattataagcacatatatcacaa |
171 |
Q |
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| T |
8080300 |
tatatcaaaa-caccaaactcaggatacacatagcattatcatgatttcatataagcaaacattcaacataccacttaattataagcacatatatcacaa |
8080202 |
T |
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| Q |
172 |
agcatacactgcacacaacacattacataaccatatattaaccaactatcatcatataaacatcagatcaatctgttgaaaatgaccaactttcaatagg |
271 |
Q |
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| T |
8080201 |
agcatacactgcacacaacacattacataaccatatattaaccaactatcatcatataaacatcagatcaatctgttgaaaatgaccaactttcaatagg |
8080102 |
T |
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| Q |
272 |
taatcattaggttactctattgtagtctctg |
302 |
Q |
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| T |
8080101 |
taatcattaggttactctattgtagtctctg |
8080071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 8067621 - 8067734
Alignment:
| Q |
17 |
acatcataaaaccctacttataatttccatattaccattctaggtattgcaaacatatatcaaaatcaccaaactcaggatacacatagcattatcgtga |
116 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||||| ||| |
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| T |
8067621 |
acatcataaaaccctgcttataatttccatattacccttctaggtattgcaaacatgtatcaa----accaaacacaggatacacataacattatcatga |
8067716 |
T |
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| Q |
117 |
tttcatataagcaaacat |
134 |
Q |
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| T |
8067717 |
tttcatataagcaaacat |
8067734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 8080546 - 8080484
Alignment:
| Q |
17 |
acatcataaaaccctacttataatttccatattaccattctaggtattgcaaacatatatcaa |
79 |
Q |
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| T |
8080546 |
acatcataaaaccctacttataatttccatattaccattctaggtattgcaaacatatatcaa |
8080484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 8067732 - 8067832
Alignment:
| Q |
203 |
catatattaaccaactatcatcatataaacatcagatcaatc-tgttgaaaatgaccaactttcaataggtaatcattaggttactctattgtagtctct |
301 |
Q |
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||||||| || |||||||||| |||||||||||||| ||||| || |||| |||||||||| ||||||||||||| ||||||||||||||| |||||||| |
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| T |
8067732 |
catatatcaagcaactatcatgatataaacatcagaccaatcctgatgaatatgaccaactctcaataggtaatcgttaggttactctattttagtctct |
8067831 |
T |
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| Q |
302 |
g |
302 |
Q |
| |
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| |
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| T |
8067832 |
g |
8067832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 8071612 - 8071527
Alignment:
| Q |
17 |
acatcataaaaccctacttataatttccatattaccattctaggtattgcaaacatatatcaaaatcaccaaactcaggatacacata |
104 |
Q |
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||||||||||||||| |||||||||||||||||||| |||| |||||||||||| | |||||||||||| || ||||||| |||||| |
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| T |
8071612 |
acatcataaaaccctccttataatttccatattacccttcttggtattgcaaac--acatcaaaatcacctaattcaggatccacata |
8071527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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