View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1586_low_13 (Length: 302)
Name: NF1586_low_13
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1586_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 9676520 - 9676242
Alignment:
| Q |
9 |
gataatacttaaactaattcattcatattaaaagatttttccctttgtataggacttagcatttagacatgcttctccaaaagaattaaaggctaaaact |
108 |
Q |
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| T |
9676520 |
gataatacttaaactaattcattcatattaaaagatttttccctttgtttaggacttagcatttagacatgcttctccaaaagaattaaaggctaaaact |
9676421 |
T |
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| Q |
109 |
agccatttgagtaggattttaaagttacagctctgtgtttatctagaagggaaaagtgatttgtattaatacccttgtctattttagcatacaactattc |
208 |
Q |
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| T |
9676420 |
agccatttgagtaggattttaaagttacagctctgtgtttatctagaagggaaaagtgatttgtattaatacccttgtctattttagcatacaactattc |
9676321 |
T |
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| Q |
209 |
gaccaaaatgattctagagtagcaagtatcaatttctatgtaaacaattgatgatagtcattcaaagaatataaataat |
287 |
Q |
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| T |
9676320 |
gaccaaaatgattctagagtagcaagtatcaatttctatgtaaacaattgatgatagtcattcaaagaatataaataat |
9676242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 259
Target Start/End: Original strand, 35161870 - 35161987
Alignment:
| Q |
141 |
ctgtgtttatctagaagggaaaagtgatttgtattaatacccttgtctattttagcatacaactattcgaccaaaatgattctagagtagcaagtatcaa |
240 |
Q |
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| T |
35161870 |
ctgtgtttatctagaagtgaaatgtgatta-tattaatatcgttgtttcttttaacatacaactattcgacaaaaatgattttagagtagcaagtatcaa |
35161968 |
T |
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| Q |
241 |
tttctatgtaaacaattga |
259 |
Q |
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| T |
35161969 |
cttctatgaaaacaattga |
35161987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 256
Target Start/End: Original strand, 35154850 - 35154985
Alignment:
| Q |
119 |
gtaggattttaaagttacagctctgtgtttatctagaagggaaaagtgatttgtattaatacccttgtctattttagcatacaactattcgaccaaaatg |
218 |
Q |
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|||||||||| |||||||| || ||||||||||| |||||||| ||| ||||||||| |||||| ||||||||||||| ||||||| ||||| |
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| T |
35154850 |
gtaggattttgaagttacaactttgtgtttatctcaaagggaaagaaaattagtattaatattgttgtctcttttagcatacaa--attcgacggaaatg |
35154947 |
T |
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| Q |
219 |
attctagagtagcaagtatcaatttctatgtaaacaat |
256 |
Q |
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||| |||||||||||||||||| ||||||| ||||||| |
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| T |
35154948 |
attttagagtagcaagtatcaacttctatgaaaacaat |
35154985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 31853453 - 31853357
Alignment:
| Q |
144 |
tgtttatctagaagggaaaagtgatttgt-attaatacccttgtctattttagcatacaactattcgaccaaaatgattctagagtagcaagtatca |
239 |
Q |
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||||||| | |||| |||||||||||| | ||||||| | ||||| |||||||||||||||||| ||| ||||||||| ||||||||||||||||| |
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| T |
31853453 |
tgtttattttgaagagaaaagtgatttattattaatatcggtgtctcttttagcatacaactatttgactaaaatgattttagagtagcaagtatca |
31853357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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