View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1586_low_14 (Length: 291)

Name: NF1586_low_14
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1586_low_14
NF1586_low_14
[»] chr2 (1 HSPs)
chr2 (1-291)||(44956334-44956624)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 44956334 - 44956624
Alignment:
Q  1 catgttggtgatgacaactcatgagtacagaaggtacaattgcaaacaatgtgatgacaatttgagcttttgcaaatggaactaaatgagaatatcttcg 100  Q
    ||||||||||||||||||||| || |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44956334 catgttggtgatgacaactcaagattcaagaaggtacaattgcaaacaatgtgatgacaatttgagcttttgcaaatggaactaaatgagaatatctttg 44956433  T
Q  101 aatatttcaatagaataacagtggtgggaaaccaggtgaagatgtgtatgatcaaaaaatggtgaacaaggtaatgcacactctttcttgaaaatttggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44956434 aatatttcaatagaataacagtggtgggaaaccaggtgaagatgtgtatgatcaaaaaatggtgaacaaggtaatgcacactctttcttgaaaatttggt 44956533  T
Q  201 tacatatatagaagttgcaattgaggaatcaagggacttgtaagttatgaaagttgaggaatttcagtgtgttcttttgaagctcagaaac 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  44956534 tacatatatagaagttgcaattgaggaatcaagggacttgtaagttatgaaagttgaggaatttcagtgtgttctttggaagctcataaac 44956624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University