View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1586_low_15 (Length: 285)
Name: NF1586_low_15
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1586_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 34909851 - 34910101
Alignment:
| Q |
19 |
ccctgtgcaatcaaaagccggggttgaggttgaaccaaatgcaggggtgctggttacnnnnnnnncaggtgtgttgattacaaaataaacaggggtgctg |
118 |
Q |
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| T |
34909851 |
ccctgtgcaatcaaaagccggggttgaggttgaaccaaatgcaggggtgctggttacaaaaaaaacaggtgtgttgattacaaaataaacaggggtgctg |
34909950 |
T |
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| Q |
119 |
gttacacaaaaaacaggggcaccggtagcaccagatgcagtgcctgtagaaccaaaagcaggggggcctgttaaaccaaatatgctgcttccaaatgctg |
218 |
Q |
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| T |
34909951 |
gttacacaaaaaacaggggcaccggtagcaccagatgcagtgcctgtagaaccaaaagcaggggggcctgttaaaccaaatatgctgcttccaaatgctg |
34910050 |
T |
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| Q |
219 |
gttggatggagcatccaaaaggacttatttgagtaggtgtatagccaaaac |
269 |
Q |
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| T |
34910051 |
gttggatggagcatccaaaaggacttatttgagtaggtgtatagccaaaac |
34910101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 28543581 - 28543523
Alignment:
| Q |
164 |
gtagaaccaaaagcaggggggcctgttaaaccaaatatgctgcttccaaatgctggttg |
222 |
Q |
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| T |
28543581 |
gtagcaccaaaagcaggggtgcctgttaaaccaaatatgttgcttccaaatactggttg |
28543523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 34895973 - 34896016
Alignment:
| Q |
30 |
caaaagccggggttgaggttgaaccaaatgcaggggtgctggtt |
73 |
Q |
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| T |
34895973 |
caaaagctgaggttgaagttgaaccaaatgcaggggtgctggtt |
34896016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 34896183 - 34896213
Alignment:
| Q |
192 |
aaccaaatatgctgcttccaaatgctggttg |
222 |
Q |
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| T |
34896183 |
aaccaaatatgctgcttccaaatgctggttg |
34896213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 34915891 - 34915933
Alignment:
| Q |
31 |
aaaagccggggttgaggttgaaccaaatgcaggggtgctggtt |
73 |
Q |
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|||||| | |||||| ||||||||||||||||||||||||||| |
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| T |
34915891 |
aaaagctgaggttgaagttgaaccaaatgcaggggtgctggtt |
34915933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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