View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1586_low_19 (Length: 252)
Name: NF1586_low_19
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1586_low_19 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 73 - 252
Target Start/End: Original strand, 31430588 - 31430767
Alignment:
| Q |
73 |
ttgaatttagtgttggattgaatgcatatgtgttgctttatttgatgctagatgataatgaatgaagtaagaaagaaaatgtttatcatgtgatgcgatg |
172 |
Q |
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| T |
31430588 |
ttgaatttagtgttggattgaatgcatatttgttgctttatttgatgctagatgataatgaatgaagtaagaaagaaaatgtttaccatgtgatgcgatg |
31430687 |
T |
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| Q |
173 |
atttggaattgttcatccggttatagtatgaaaattaaataaatttggttttcttttaagtgtggctagtgtattctgtg |
252 |
Q |
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| T |
31430688 |
atttggaattgttcatccggttatattatgaaaattaaataaatttggttttcttttaagtgtggctagtgtgttctgtg |
31430767 |
T |
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Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 88 - 252
Target Start/End: Complemental strand, 32849063 - 32848898
Alignment:
| Q |
88 |
gattgaatgcatatgtgttgctttatttgatgctagatgataatgaatgaagtaagaaagaaaatgtttatcatgtgatgcgatgatttggaattgttca |
187 |
Q |
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| T |
32849063 |
gattgaatgcatatgtgttgctttatttgatgctagatgataaagaatgaagtaagaaagcaaatgattatcatgtgatgtgatgatttggaattgttca |
32848964 |
T |
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| Q |
188 |
tccggttatagtatgaaaattaaataaatttggttttct-tttaagtgtggctagtgtattctgtg |
252 |
Q |
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| T |
32848963 |
accggttatattatgaaaattaaataacgttggttttctattttagtgtggttagtgtattatgtg |
32848898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 88 - 252
Target Start/End: Original strand, 11430145 - 11430306
Alignment:
| Q |
88 |
gattgaatgcatatgtgttgctttatttgatgctagatgataatgaatgaagtaagaaagaaaatgtttatcatgtgatgcgatgatttggaattgttca |
187 |
Q |
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| T |
11430145 |
gattgaatgcatatgtgttgctttatttgatgctagatgataaagaatgaagtaagaaagcaaatgattatcatgtgatgtgatgatttggaattgttca |
11430244 |
T |
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| Q |
188 |
tccggttatagtatgaaaattaaataaatttggttttct-tttaagtgtggctagtgtattctgtg |
252 |
Q |
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| T |
11430245 |
accagttatattatgaaaat----taacgttggttttctattttagtgtggttagtgtattctgtg |
11430306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 174 - 252
Target Start/End: Complemental strand, 41283207 - 41283128
Alignment:
| Q |
174 |
tttggaattgttcatccggttatagtatgaaaattaaataaatttggttttct-tttaagtgtggctagtgtattctgtg |
252 |
Q |
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| T |
41283207 |
tttggaattgttcatctggttatattatgaaaattaaatatagttggttttctatttaagtgtggctagtgtactctgtg |
41283128 |
T |
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