View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1586_low_2 (Length: 692)

Name: NF1586_low_2
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1586_low_2
NF1586_low_2
[»] chr5 (5 HSPs)
chr5 (1-676)||(41885978-41886652)
chr5 (1-179)||(41900361-41900539)
chr5 (308-383)||(32268868-32268943)
chr5 (1-180)||(32268546-32268725)
chr5 (311-358)||(41900191-41900238)
[»] scaffold1155 (1 HSPs)
scaffold1155 (7-111)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (7-111)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (7-111)||(30584-30688)
[»] chr3 (3 HSPs)
chr3 (318-362)||(51120326-51120370)
chr3 (1-111)||(51763325-51763435)
chr3 (77-114)||(1657614-1657651)
[»] chr2 (1 HSPs)
chr2 (318-362)||(45244522-45244566)
[»] chr8 (3 HSPs)
chr8 (72-121)||(17635581-17635630)
chr8 (72-101)||(17642880-17642909)
chr8 (318-358)||(17642614-17642654)
[»] chr7 (1 HSPs)
chr7 (321-358)||(10616209-10616246)
[»] chr6 (3 HSPs)
chr6 (72-121)||(9412203-9412252)
chr6 (77-114)||(11935970-11936007)
chr6 (77-114)||(11947950-11947987)
[»] chr4 (5 HSPs)
chr4 (77-114)||(645194-645231)
chr4 (318-358)||(1488824-1488864)
chr4 (318-358)||(1537251-1537291)
chr4 (78-138)||(1545952-1546012)
chr4 (318-358)||(12120920-12120960)


Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 676
Target Start/End: Complemental strand, 41886652 - 41885978
Alignment:
Q  1 gagaggtcaaagttgtaatctttttggcaaaaactcacaacccatttgtgggaataatacgttgatacgaaagattgagtgatgtgagtttcaatggaaa 100  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886652 gagaggttaaagttgtaatctttttggcaaaaactcgcaacccatttgtgggaataatacgttgatacgaaagattgagtgatgtgagtttcaatggaaa 41886553  T
Q  101 attagagatttggccgagaagtttactgaggttaccacggaagctagaaaggtcgagagaggtgagattgatgaatctactgagtagacgaggaggaaaa 200  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886552 attagagatttggccgagaagtttgctgaggttaccgcggaagctagaaaggtcgagagaggtgagattgatgaatctactgagtagacgaggaggaaaa 41886453  T
Q  201 gggagggtttgactttgatcatagcagattgtgagagagaatctgatgcagttggtgatggacaagaattgtttcgagacaactgacaaagatgtcatgc 300  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886452 gggagggtt-gactttgatcacagcagattgtgagagagaatctgatgcggttggtgatggacaagaattgtttcgagacaactgacaaagatgtcatgc 41886354  T
Q  301 aactatggttgtctttcaggaatttgaagacacattctcaacactcatcaggtaaatagaaaccaccaaccattgtttttcttttgcttcttcttgcttg 400  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41886353 aactatggttgtctttcaggaatttgaagacacattcccaacactcatcaggtaaatagaaaccaccaatcattgtttttcttttgcttcttcttgcttg 41886254  T
Q  401 agtggactccatagttggtttgaaagatcttcttttccttttcatagtggacttccagtcaaataatcttatgttaacttgtgaagctactttagaggtt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41886253 agtggactccatagttggtttgaaagatcttcttttccttttcatagtggacttccagtcaaataatcttatgttaacttgtgaagctattttagaggtt 41886154  T
Q  501 aagtactcaggtatttagaggagaaatcannnnnnnnaaggaatcattttagaaaagtcgccaccatcatcatcagcatcccaattctcaaggaagcagt 600  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||| |||    
T  41886153 aagtactcaggtatttagaggagaaatcattttttttaaggaatcattttagaaaagttgccaccatcatcagcagcatcccaattcccaaggaagtagt 41886054  T
Q  601 aacatcatcttttaacagatagaagcggtttggtggatcatatcatcactacaccttgtactgtaaagtaatatgt 676  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41886053 aacatcatcttttaacagatagaagcagtttggtggatcatatcatcactactccttgtactgtaaagtaatatgt 41885978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 41900539 - 41900361
Alignment:
Q  1 gagaggtcaaagttgtaatctttttggcaaaaactcacaacccatttgtgggaataatacgttgatacgaaagattgagtgatgtgagtttcaatggaaa 100  Q
    ||||||||||||||||||||||||||| |||| |||  ||||||  || ||| || |  | ||| |  || || ||||||||||||||||||||||||||    
T  41900539 gagaggtcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagtttcaatggaaa 41900440  T
Q  101 attagagatttggccgagaagtttactgaggttaccacggaagctagaaaggtcgagagaggtgagattgatgaatcta 179  Q
    || ||||||||| |  ||||||||  |||||||||||  |||||  || || | ||| |||||||||||| | ||||||    
T  41900439 atgagagatttgacaaagaagtttgttgaggttaccatagaagcgcgagagattgagggaggtgagattggtaaatcta 41900361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 308 - 383
Target Start/End: Original strand, 32268868 - 32268943
Alignment:
Q  308 gttgtctttcaggaatttgaagacacattctcaacactcatcaggtaaatagaaaccaccaaccattgtttttctt 383  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||||||||  |||||  || ||||| |||||||    
T  32268868 gttgtctttcaagaatttgaagacacattcccaacactcatctggtaaatatgaaccagaaatcattgattttctt 32268943  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 32268546 - 32268725
Alignment:
Q  1 gagaggtcaaagttgtaatctttttggcaaaaactca-caacccatttgtgggaataatacgttgatacgaaagattgagtgatgtgagtttcaatggaa 99  Q
    |||||||||||||||||||||| || | ||||| ||  ||||||| |||||||||| || | ||  |  || ||||||||||| ||||||||||||||||    
T  32268546 gagaggtcaaagttgtaatcttcttcg-aaaaagtctgcaacccaattgtgggaatgatgcatttgtttgagagattgagtgacgtgagtttcaatggaa 32268644  T
Q  100 aattagagatttggccgagaagtttactgaggttaccacggaagctagaaaggtcgagagaggtgagattgatgaatctac 180  Q
    ||  ||||||||| | |||||| ||  |||| |||||   ||| |  || |||||||| |||||||| ||| |||||||||    
T  32268645 aacgagagatttgacagagaagcttgttgagtttaccgttgaaacacgagaggtcgagggaggtgaggttggtgaatctac 32268725  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 41900238 - 41900191
Alignment:
Q  311 gtctttcaggaatttgaagacacattctcaacactcatcaggtaaata 358  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  41900238 gtctttgaggaatttgaagacacattcccaacactcatctggtaaata 41900191  T

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Target: scaffold1155 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 1925 - 1821
Alignment:
Q  7 tcaaagttgtaatctttttggcaaaaactcacaacccatttgtgggaataatacgttgatacgaaagattgagtgatgtgagtttcaatggaaaattaga 106  Q
    ||||||||||||| |||| ||  ||||||| |||||||| || |||||| ||  |||| || || ||||||||||||||||| |||||||| |||  |||    
T  1925 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 1826  T
Q  107 gattt 111  Q
    |||||    
T  1825 gattt 1821  T

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Target: scaffold0345 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 8291 - 8395
Alignment:
Q  7 tcaaagttgtaatctttttggcaaaaactcacaacccatttgtgggaataatacgttgatacgaaagattgagtgatgtgagtttcaatggaaaattaga 106  Q
    ||||||||||||| |||| ||  ||||||| |||||||| || |||||| ||  |||| || || ||||||||||||||||| |||||||| |||  |||    
T  8291 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 8390  T
Q  107 gattt 111  Q
    |||||    
T  8391 gattt 8395  T

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Target: scaffold0105 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 30688 - 30584
Alignment:
Q  7 tcaaagttgtaatctttttggcaaaaactcacaacccatttgtgggaataatacgttgatacgaaagattgagtgatgtgagtttcaatggaaaattaga 106  Q
    ||||||||||||| |||| ||  ||||||| |||||||| || |||||| ||  |||| || || ||||||||||||||||| |||||||| |||  |||    
T  30688 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 30589  T
Q  107 gattt 111  Q
    |||||    
T  30588 gattt 30584  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 51120370 - 51120326
Alignment:
Q  318 aggaatttgaagacacattctcaacactcatcaggtaaatagaaa 362  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  51120370 aggaatttgaagacacattcccaacagtcatcaggtaaatagaaa 51120326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 51763435 - 51763325
Alignment:
Q  1 gagaggtcaaagttgtaatctttttggcaaaaactcacaacccatttgtgggaataatacgttgatacgaaagattgagtgatgtgagtttcaatggaaa 100  Q
    |||| |||||||||||||||||||  | |||||||| |||||||||||| ||||   || | || |  || ||||| |||||||||||||||||||| ||    
T  51763435 gagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttgtaggaaaggtaagctgtttggagagattaagtgatgtgagtttcaatgggaa 51763336  T
Q  101 attagagattt 111  Q
    |  ||||||||    
T  51763335 acgagagattt 51763325  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 1657614 - 1657651
Alignment:
Q  77 gagtgatgtgagtttcaatggaaaattagagatttggc 114  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  1657614 gagtgatgtgagtctcaatggaaaactagagatttggc 1657651  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 45244566 - 45244522
Alignment:
Q  318 aggaatttgaagacacattctcaacactcatcaggtaaatagaaa 362  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  45244566 aggaatttcaagacacattcccaacactcatcaggtaaatagaaa 45244522  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 17635630 - 17635581
Alignment:
Q  72 agattgagtgatgtgagtttcaatggaaaattagagatttggccgagaag 121  Q
    |||||||||||| |||||||||||||||||  |||||||| || ||||||    
T  17635630 agattgagtgatatgagtttcaatggaaaaggagagatttcgcagagaag 17635581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 101
Target Start/End: Complemental strand, 17642909 - 17642880
Alignment:
Q  72 agattgagtgatgtgagtttcaatggaaaa 101  Q
    ||||||||||||||||||||||||||||||    
T  17642909 agattgagtgatgtgagtttcaatggaaaa 17642880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 17642654 - 17642614
Alignment:
Q  318 aggaatttgaagacacattctcaacactcatcaggtaaata 358  Q
    ||||||||||||||| | || ||||||||||||||||||||    
T  17642654 aggaatttgaagacagactcccaacactcatcaggtaaata 17642614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 10616209 - 10616246
Alignment:
Q  321 aatttgaagacacattctcaacactcatcaggtaaata 358  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaata 10616246  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 9412203 - 9412252
Alignment:
Q  72 agattgagtgatgtgagtttcaatggaaaattagagatttggccgagaag 121  Q
    ||||| ||||||| ||||||||||||||||  ||||||||| ||||||||    
T  9412203 agattaagtgatgagagtttcaatggaaaacgagagatttgaccgagaag 9412252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 11936007 - 11935970
Alignment:
Q  77 gagtgatgtgagtttcaatggaaaattagagatttggc 114  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  11936007 gagtgatgtgagtctcaatggaaaactagagatttggc 11935970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 11947987 - 11947950
Alignment:
Q  77 gagtgatgtgagtttcaatggaaaattagagatttggc 114  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  11947987 gagtgatgtgagtctcaatggaaaactagagatttggc 11947950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 645194 - 645231
Alignment:
Q  77 gagtgatgtgagtttcaatggaaaattagagatttggc 114  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  645194 gagtgatgtgagtctcaatggaaaactagagatttggc 645231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 1488864 - 1488824
Alignment:
Q  318 aggaatttgaagacacattctcaacactcatcaggtaaata 358  Q
    |||||||||| ||||||||| || |||||||||||||||||    
T  1488864 aggaatttgacgacacattcccagcactcatcaggtaaata 1488824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 1537291 - 1537251
Alignment:
Q  318 aggaatttgaagacacattctcaacactcatcaggtaaata 358  Q
    |||||| |||| |||||||| ||||||||||||||||||||    
T  1537291 aggaatctgaatacacattcccaacactcatcaggtaaata 1537251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 1545952 - 1546012
Alignment:
Q  78 agtgatgtgagtttcaatggaaaattagagatttggccgagaagtttactgaggttaccac 138  Q
    |||| ||||||||||||||||||| |||||||||||  |||||| ||  |||||| |||||    
T  1545952 agtgttgtgagtttcaatggaaaagtagagatttggtagagaagcttgttgaggtcaccac 1546012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 12120960 - 12120920
Alignment:
Q  318 aggaatttgaagacacattctcaacactcatcaggtaaata 358  Q
    |||||| ||| ||||||||| ||||||||||||||||||||    
T  12120960 aggaatctgatgacacattcccaacactcatcaggtaaata 12120920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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