View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1586_low_26 (Length: 223)
Name: NF1586_low_26
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1586_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 1606125 - 1606302
Alignment:
| Q |
25 |
cataattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagt |
124 |
Q |
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| T |
1606125 |
cataattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacccagggggcttactaaagtgtccatgaaagt |
1606224 |
T |
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| Q |
125 |
tttcatcaccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttag |
202 |
Q |
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| T |
1606225 |
tttcatcaccataactcttgaatattgttgccaaggcctgcccaagaaggttttgtacttgtcaacaacaggctttag |
1606302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 1629423 - 1629600
Alignment:
| Q |
25 |
cataattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
1629423 |
cataattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagt |
1629522 |
T |
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| Q |
125 |
tttcatcaccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttag |
202 |
Q |
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| T |
1629523 |
tttcatcaccattactcttgaatattgttgccaaggtctgcccaagaaggttttgtacttgtcaacaacaggttttag |
1629600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 10821275 - 10821098
Alignment:
| Q |
25 |
cataattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagt |
124 |
Q |
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| T |
10821275 |
cataattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctgactaaagtgtccataaaagt |
10821176 |
T |
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| Q |
125 |
tttcatcaccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttag |
202 |
Q |
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|||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |
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| T |
10821175 |
tttcatcaccataactcttgaatattgttgccaaggtcttcctaagaaggttttgtacttgtcaacaacaggctttag |
10821098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 33 - 202
Target Start/End: Original strand, 1623255 - 1623424
Alignment:
| Q |
33 |
tcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatca |
132 |
Q |
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| T |
1623255 |
tcatactctccataatacaatgtatcttgagcaaaatctgtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatca |
1623354 |
T |
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| Q |
133 |
ccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttag |
202 |
Q |
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| T |
1623355 |
ccataactcttgagaattgttgccaaggccttcccaagaaggttttgtacttgtcaacaacaggctttag |
1623424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 18780941 - 18781118
Alignment:
| Q |
25 |
cataattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagt |
124 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
18780941 |
cataattctcatactcgccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagt |
18781040 |
T |
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| Q |
125 |
tttcatcaccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttag |
202 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18781041 |
tttcatcaccataactcttgaatattgttgccaaggcctgcccaagaaggttttgtacttgtcaacaacaggctttag |
18781118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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