View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1586_low_5 (Length: 489)
Name: NF1586_low_5
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1586_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 268 - 474
Target Start/End: Complemental strand, 1829967 - 1829760
Alignment:
| Q |
268 |
gtatagacctttccttttgatactgaaacttacagaaattatttctaatacacaaattcacaggtggcacagcaaaatcactgcatcaatcaatattcat |
367 |
Q |
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| T |
1829967 |
gtatagacctttccttttgtaacttaaactaacagaaattacttctaatacacaaattcacaggtggcacagcaaaatcactgcatcaatcagtattcat |
1829868 |
T |
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| Q |
368 |
ttcttttatttttt-aatgaatgtatcaattaatagtcactggtaaatttatttaaaacagatgaaatattgtagcaggctatggtgattgcgagctaaa |
466 |
Q |
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| T |
1829867 |
ttcttttatttttttaatgaatgtatcaattaatagtcactggtaaatttatttaaaacagatgaaatattgtagcaggctatggtgattgtgagctaaa |
1829768 |
T |
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| Q |
467 |
gcaacatt |
474 |
Q |
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|||||||| |
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| T |
1829767 |
gcaacatt |
1829760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 240 - 429
Target Start/End: Complemental strand, 1844861 - 1844667
Alignment:
| Q |
240 |
gatcttctacaagaagcaggaagtaaaagtatagacctttcctt-ttgatactgaaacttacagaaattatttct-aatacacaaattcacaggtggcac |
337 |
Q |
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| T |
1844861 |
gatcttctacaagaagcaggaagtaaaagtatagacctttccttcttgaaactgaaactaacagaaattacttctcaatacacacattcaaagggggcac |
1844762 |
T |
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| Q |
338 |
agcaaaatcactgcatcaa---tcaatattcatttcttttattttttaatg-aatgtatcaattaatagtcactggtaaatttatttaaaacagat |
429 |
Q |
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| T |
1844761 |
aacaaaatcgatgcattaatattcaatagtcacttctttta-tttttaatgaaatgtatcaatcaataatcacaagtaaatttattccaaacagat |
1844667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 1830058 - 1829987
Alignment:
| Q |
1 |
atgaaaatccaaaaagaagatgaagaaaaagtggggggacaaggacaatttctagttgcagtttttggaata |
72 |
Q |
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| T |
1830058 |
atgaaaatccaaaaagaagatgaagaaaaagtggggggacaaggacaatttctagttgcagtttttggaata |
1829987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 1814405 - 1814346
Alignment:
| Q |
5 |
aaatccaaaaagaagatgaagaaaaagtggggggacaaggacaatttctagttgcagttt |
64 |
Q |
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| T |
1814405 |
aaatccaaaaagaagatgaagaaaaagtgaggggacaaggacaatttctagttgcagttt |
1814346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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