View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1586_low_6 (Length: 476)
Name: NF1586_low_6
Description: NF1586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1586_low_6 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 40 - 460
Target Start/End: Complemental strand, 77015 - 76583
Alignment:
| Q |
40 |
tgattcttcaacagacagcattttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaatggagattccaa |
139 |
Q |
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| T |
77015 |
tgattcttcaacagacagcattttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaatggagattccaa |
76916 |
T |
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| Q |
140 |
tttaattaaacactttaattaatgtttttgggcttaatgtatgtatatgatggaatgnnnnnnncaattcatgaccaaatacagagtatatagccttaca |
239 |
Q |
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| T |
76915 |
tttaattaaacactttaattaatgtttttgggcttaatgtat----atgatggaatgaaaaaaacaattcatgaccaaatacagagtatataaccttaca |
76820 |
T |
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| Q |
240 |
aaaactgaaattcactatagaagcagaataataaagatgtcatgtcacatcataaagttagtttaatttttatgaatattctcataagatccatatacac |
339 |
Q |
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| T |
76819 |
aaaactgaaattcactatagaagcagaataataaagatgtcatgtcacatcataaagttagtttaacttttatgaatattctcataagatccatgtacac |
76720 |
T |
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| Q |
340 |
catttcaactcacttattgaaaaatgtagctagaaaaacaaaaattagtatat-gtgtat---------------aataatatatacataccaattcatt |
423 |
Q |
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| T |
76719 |
catttcaactcacttattgaaaaatgtagctagaaaaacaaaaattagtatatagattattaaaattgatatgtgtataatatatacataccaattcatt |
76620 |
T |
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| Q |
424 |
gccaaggttcatggcagcatcttggtaggtagttttt |
460 |
Q |
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| T |
76619 |
gccaaggttcatggcagcatcttggtaggtagttttt |
76583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 40 - 460
Target Start/End: Original strand, 40889269 - 40889701
Alignment:
| Q |
40 |
tgattcttcaacagacagcattttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaatggagattccaa |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40889269 |
tgattcttcaacagacagcattttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaatggagattccaa |
40889368 |
T |
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| Q |
140 |
tttaattaaacactttaattaatgtttttgggcttaatgtatgtatatgatggaatgnnnnnnncaattcatgaccaaatacagagtatatagccttaca |
239 |
Q |
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| T |
40889369 |
tttaattaaacactttaattaatgtttttgggcttaatgtat----atgatggaatgaaaaaaacaattcatgaccaaatacagagtatataaccttaca |
40889464 |
T |
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| Q |
240 |
aaaactgaaattcactatagaagcagaataataaagatgtcatgtcacatcataaagttagtttaatttttatgaatattctcataagatccatatacac |
339 |
Q |
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| T |
40889465 |
aaaactgaaattcactatagaagcagaataataaagatgtcatgtcacatcataaagttagtttaacttttatgaatattctcataagatccatgtacac |
40889564 |
T |
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| Q |
340 |
catttcaactcacttattgaaaaatgtagctagaaaaacaaaaattagtatat-gtgtat---------------aataatatatacataccaattcatt |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |
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| T |
40889565 |
catttcaactcacttattgaaaaatgtagctagaaaaacaaaaattagtatatagattattaaaattgatatgtgtataatatatacataccaattcatt |
40889664 |
T |
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| Q |
424 |
gccaaggttcatggcagcatcttggtaggtagttttt |
460 |
Q |
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| T |
40889665 |
gccaaggttcatggcagcatcttggtaggtagttttt |
40889701 |
T |
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