View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1587-INSERTION-1 (Length: 377)
Name: NF1587-INSERTION-1
Description: NF1587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1587-INSERTION-1 |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0624 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 22710164 - 22709795
Alignment:
| Q |
8 |
ctcatttggccccattttaacatagggccatgacattttctcggtaagtcacgctactagagggtgcaatgattgaatgagaattatgactgaattatga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22710164 |
ctcatttggccccattttaacatagggccatgacattttctcggtaagtcacgctactagagggtgcaatgattgaatgagaattatgactgaattatga |
22710065 |
T |
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| Q |
108 |
agacttcaaagtcttagttctaaattatgagaacttcaaagtctaagttctaaattgcatacacactgagatgggattacgtagaatatcatgaaagatg |
207 |
Q |
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| T |
22710064 |
agacttcaaagtcttagttctaaattatgagaacttcaaagtctaagttctaaattgcatacacactgaaatgggattacgtagaatatcattaaagatg |
22709965 |
T |
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| Q |
208 |
gattgtagggtacaaaagaggaaaaattggacgttctaattggaacaactttcacctaaatcattgttatgagaattttgatctataatatatattcttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22709964 |
gattgtagggtacaaaagaggaaaaattggacgttctaattggaacaactttcacctaaatcattgttatgagaattttgatctataatatatattcttt |
22709865 |
T |
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| Q |
308 |
gtatactatttttctttcatatgtgagcattcctccatgtgttcagttccaagaattgcattcattccca |
377 |
Q |
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| T |
22709864 |
gtatactatttttctttcatatgtgagcattcctccatgtgttcagtttcaagaattgcattcattccca |
22709795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 100 - 374
Target Start/End: Complemental strand, 22719885 - 22719602
Alignment:
| Q |
100 |
aattatgaagacttcaaagtcttagttctaaattatgagaacttcaaagtctaagttctaaattgcatacacactgagatgggattacgtagaatatcat |
199 |
Q |
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| T |
22719885 |
aattatgaaaacttaaaactctaagttctaaattacgagaacttcaaagtctaagttctaaattgcatacacactaagatgagattacgtagaatatcat |
22719786 |
T |
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| Q |
200 |
gaaag--------atggattgtagggtacaaaagaggaaaaa-ttggacgttctaattggaacaactttcacctaaatcattgttatgagaattttgatc |
290 |
Q |
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| T |
22719785 |
gaaagttcaagatatggattgaagggtacaaaagaggaaaaaattggacgttctaattggaacaactttcacataaatcattgttatgagaattttgatc |
22719686 |
T |
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| Q |
291 |
tataatatatattctttgtatactatttttctttcatatgtgagcattcctccatgtgttcagttccaagaattgcattcattc |
374 |
Q |
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| T |
22719685 |
taaaatatatattctttgtatactatttttctttcatatgtgagcatccctccatgtgtttagtttcaagaattgcattcattc |
22719602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 272 - 374
Target Start/End: Original strand, 23869221 - 23869324
Alignment:
| Q |
272 |
tgttatgagaattttgatctataatatatattcttt-gtatactatttttctttcatatgtgagcattcctccatgtgttcagttccaagaattgcattc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23869221 |
tgttatgagaattttgatctataatatatattcttttgtatactatttttctttcatatgtgagcattcctccatgtgttcagtttcaagaattgcattc |
23869320 |
T |
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| Q |
371 |
attc |
374 |
Q |
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|||| |
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| T |
23869321 |
attc |
23869324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 22719945 - 22719893
Alignment:
| Q |
12 |
tttggccccattttaacata--gggccatgacattttctcggtaagtcacgct |
62 |
Q |
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| T |
22719945 |
tttggccccattgtaacataaagggccatgacattttctcggttagtcacgct |
22719893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0624 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: scaffold0624
Description:
Target: scaffold0624; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 3320 - 3126
Alignment:
| Q |
12 |
tttggccccattttaacata--gggccatgacattttctcggtaagtcacgctactagagggtgcaatgattgaatgagaattatgactgaattatgaag |
109 |
Q |
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||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3320 |
tttggtcccattttaacataaagggccatgaaattttctcggtaagtcacgctactagagggtgcaatgattgaatgagaattatgactgaattatgaag |
3221 |
T |
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| Q |
110 |
acttcaaagtcttagttctaaattatgagaacttcaaagtctaagttctaaattgcatacacactgagatgggattacgtagaatatcatgaaag |
204 |
Q |
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| T |
3220 |
acttgaaagtcttagttctaaattatgagaacttcaaagtctaagttctagattacatacacactgagatgtgattacgtagaatatcatgaaag |
3126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0624; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 2230 - 2191
Alignment:
| Q |
237 |
gacgttctaattggaacaactttcacctaaatcattgtta |
276 |
Q |
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| T |
2230 |
gacgttctgattggaacaactttcacataaatcattgtta |
2191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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