View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15870_high_11 (Length: 303)
Name: NF15870_high_11
Description: NF15870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15870_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 283
Target Start/End: Original strand, 23344220 - 23344474
Alignment:
| Q |
30 |
caaatccctttcagaaagacatatactatgctatatacatgttaattaggctatcttatgacagatggcacacatatgaacaaaatattgaagaagnnnn |
129 |
Q |
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| T |
23344220 |
caaatccctttcagaaagacatatactatgctatatacatgttaattaggctatcttatgacagatggtacacatatgaacaaaatattgaagaagaaaa |
23344319 |
T |
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| Q |
130 |
nnnn-gaataatcttgattaaccagttagaaatgtgttcccttgttgatcatagaaggaaaaatattgttcaccaataggagggaataacatcttgcttt |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23344320 |
aaaaagaataatcttgattaaccagttagaaatgtgttcccttgttgatcatagaaggaaaaatattggtcaccaataggagggaataacatcttgcttt |
23344419 |
T |
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| Q |
229 |
cttcttcatccatcacccacaatggatctaaatatgaataatcccatgatgatgt |
283 |
Q |
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| T |
23344420 |
cttcttcatccatcacccacaatggatctaaatatgaataatcccatgatgatgt |
23344474 |
T |
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