View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15870_high_6 (Length: 383)
Name: NF15870_high_6
Description: NF15870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15870_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 62 - 363
Target Start/End: Original strand, 31541573 - 31541866
Alignment:
| Q |
62 |
gaaggaatgtaaattgtaattgtaatatgaatagaggtggatcatggaccaatatatatatnnnnnnnnnnnnnnnngatgatcttaaattaattattaa |
161 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31541573 |
gaaggaatgtaaattgcaattgtaatatgaatagaggtggatcatggaccaatatatatataaaaaaa---------gatgatcttaaattaattattaa |
31541663 |
T |
|
| Q |
162 |
cgaggttgaaccc-ttttcaagctactgttcccattagcactattgttaacacttaacagagtataccatcaactattataggctgtaaagagagagcaa |
260 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31541664 |
cgaggttgaaccccttttcaagccactgttcccattagcattattgttaacacttaacagagtataccatcaactattataggctgtaaagagagaacaa |
31541763 |
T |
|
| Q |
261 |
caatataatgcgatcaaagatcacttaatttgattacttttcccatcaaatttttcatgaaaaatctaagagnnnnnnnccatcattcacacgtgatgat |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
31541764 |
caatataatgcgatcaaagatcacttaatttgattgcttttcccatcaaatttttcatgaaaaatctaagagagaaaaaccatcattcacacgtgttgat |
31541863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University