View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15870_high_8 (Length: 351)
Name: NF15870_high_8
Description: NF15870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15870_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 34825777 - 34825517
Alignment:
| Q |
1 |
atggtctctatcaacagttggagtgtgagccaactttacaaattgggtatgcactttttctaggctcaatcattgatcatgcttgataatgttttggtca |
100 |
Q |
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| T |
34825777 |
atggtctctatcaacagttggagtgtgagccaactttacaaattgggtatgcactttttctaggctcaatcattgatcatggttgataatgttttggtca |
34825678 |
T |
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| Q |
101 |
cactcacatctactatgt-----------------gtatttcttttaggcattattgatatcttaggaatagcatgtgtgctgcaaatatgattagtact |
183 |
Q |
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| T |
34825677 |
cactcacatctactatgttgcaaacatcatgatgtgtatttcttttaggcattattgatatcttaggaatagcatgtgtgctgcaaatatgattagtact |
34825578 |
T |
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| Q |
184 |
attgttgcttgacatgcaagcttaaatgacaactgaattctaacataagcaatttcaaata |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34825577 |
attgttgcttgacatgcaagcttaaatgacaactgaattctaacataagcaatttcaaata |
34825517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 34825275 - 34825176
Alignment:
| Q |
240 |
aaatatctccacaaaaacatgtggtgtgatctgacctgatgcatgtgtaaaaaacaatcatacaatcggtgtatacaaattaaatctatattattatttt |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34825275 |
aaatatctccacaaaaacatgtggtgtgatctgacctgatgcatgtgtaaaaaacaatcatacaatcggtgtatacaaattaaatctatattattatttt |
34825176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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