View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15871_high_1 (Length: 846)

Name: NF15871_high_1
Description: NF15871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15871_high_1
NF15871_high_1
[»] chr1 (1 HSPs)
chr1 (31-822)||(52511842-52512657)


Alignment Details
Target: chr1 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 31 - 822
Target Start/End: Original strand, 52511842 - 52512657
Alignment:
Q  31 tagtatacataccttctaagaatttggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagacctttattgttt 130  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52511842 tagtatacataccttctaagaattgggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagacctttattgttt 52511941  T
Q  131 ggcacaccagttcctaaacaaacagggcagacaagctttcctcgacctacggaaaatctgtcaatttagtcgtctactaagnnnnnnnngaaatgagcaa 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||        |||||||||||    
T  52511942 ggcacaccagttcctaaacaaacagggcagacaagctttcctcgacctacggaaaatcagtcaatttagtcgtttactaagaaaaaaa-gaaatgagcaa 52512040  T
Q  231 agtagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtacca 330  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52512041 attagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtacca 52512140  T
Q  331 ccacacatatcacctaaatgaaa----------agtagtattataataaggaagaagaatattattatta-----------aaaaagaatgaggagaaaa 409  Q
    |||||||||||||||||||||||          ||||||||||||||||||||||| | |||||||||||           | ||||||||| |||||||    
T  52512141 ccacacatatcacctaaatgaaatgaaatgaaaagtagtattataataaggaagaatattattattattattattattataacaaagaatgaagagaaaa 52512240  T
Q  410 gagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaattaa 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52512241 gagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaattaa 52512340  T
Q  510 aaatggagttgaacacaaacatttaagacattgacgcctcgaaacaannnnnnnnnnnnnnnnnnnnnnnnnctatatgaatgcaattaattaagttaat 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                         ||||||||||||||||||||||||||||    
T  52512341 aaatggagttgaacacaaacatttaagacattgacgcctcgaaacaacttcttcttcttcttcttcttcttcctatatgaatgcaattaattaagttaat 52512440  T
Q  610 gatgag----tgagtgagtaattgaaattgaattgaaactcgtatataaacatacatacataccttggaggaagaatgatatccttgattttgaggaaga 705  Q
    ||||||    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52512441 gatgagtgagtgagtgagtaattgaaattgaattgaaactcatatataaacatacatacataccttggaggaagaatgatatccttgattttgaggaaga 52512540  T
Q  706 gtggatttaacaataaaacaacgcgtccttcctgtttgtttgatggaagttggaggaaggcatcggggaataacagacgcctgcaaattgcaatccattg 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52512541 gtggatttaacaataaaacaacgcgtccttcctgtttgtttgatggaagttggaggaaggcatcgaggaataacagacgcctgcaaattgcaatccattg 52512640  T
Q  806 agatatgaagaatagag 822  Q
    |||||||||||||||||    
T  52512641 agatatgaagaatagag 52512657  T

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