View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15871_high_3 (Length: 362)

Name: NF15871_high_3
Description: NF15871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15871_high_3
NF15871_high_3
[»] chr5 (7 HSPs)
chr5 (61-361)||(37707242-37707542)
chr5 (61-361)||(37443021-37443322)
chr5 (1-66)||(37704455-37704520)
chr5 (1-61)||(37698637-37698697)
chr5 (1-66)||(37698974-37699041)
chr5 (1-58)||(37437521-37437578)
chr5 (157-190)||(39647259-39647292)
[»] chr7 (1 HSPs)
chr7 (234-287)||(34925263-34925316)
[»] chr8 (1 HSPs)
chr8 (207-278)||(11501488-11501559)
[»] chr1 (2 HSPs)
chr1 (163-225)||(4541583-4541645)
chr1 (254-291)||(10363462-10363499)
[»] chr6 (1 HSPs)
chr6 (233-278)||(21901327-21901372)
[»] chr2 (1 HSPs)
chr2 (234-291)||(38434185-38434242)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 61 - 361
Target Start/End: Complemental strand, 37707542 - 37707242
Alignment:
Q  61 tttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagtagctatagtgtacgccatactgga 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  37707542 tttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagcggctctagtgtacgccatactgga 37707443  T
Q  161 atttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttg 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37707442 atttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttg 37707343  T
Q  261 aacaaagtgttattttccatgatctgcgattctggtgaaaaccaacaagatatttcacagtataatctactaatacccgtgtctaattcacattttgtag 360  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37707342 aacaaagtgttattttccatgatctgcgattctggtgaaaacccacaagatatttcacggtataatctactaatacccgtgtctaattcacattttgtag 37707243  T
Q  361 g 361  Q
    |    
T  37707242 g 37707242  T

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Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 61 - 361
Target Start/End: Complemental strand, 37443322 - 37443021
Alignment:
Q  61 tttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagtagctatagtgtacgccatactgga 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37443322 tttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagcagctatagtgtacgccatactgga 37443223  T
Q  161 atttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttg 260  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||    
T  37443222 atttgaataaatcgttattgttttgcgatacgttattcgatatagttttgttaaatagtggctctagtgtcactgtagcattgtagcttagcaaaatttg 37443123  T
Q  261 aacaaagtgttattttccatgatctgcgattctggtgaaaaccaacaagata-tttcacagtataatctactaatacccgtgtctaattcacattttgta 359  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  37443122 aacaaagtgttattttctgtgatctgcgattctggtgaaaaccaacaagatattttcatggtataatctactaatacccgtgtctaattcacattttgta 37443023  T
Q  360 gg 361  Q
    ||    
T  37443022 gg 37443021  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 37704455 - 37704520
Alignment:
Q  1 ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttggg 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704455 ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttggg 37704520  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37698637 - 37698697
Alignment:
Q  1 ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgtt 61  Q
    |||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  37698637 ccaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgtt 37698697  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 37698974 - 37699041
Alignment:
Q  1 ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttggg 66  Q
    |||||||| |||| |||||||||||||| ||||  ||||||||| ||||||||||||||||| |||||    
T  37698974 ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttggg 37699041  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37437521 - 37437578
Alignment:
Q  1 ccaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttatttt 58  Q
    ||||||||  |||||||||||||||||| |||||| ||||||  ||||||||| ||||    
T  37437521 ccaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgtttt 37437578  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 39647292 - 39647259
Alignment:
Q  157 tggaatttgaataaatcgttattgttttgcgata 190  Q
    |||||||||||||||||||||||||| |||||||    
T  39647292 tggaatttgaataaatcgttattgttctgcgata 39647259  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 34925316 - 34925263
Alignment:
Q  234 tatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgc 287  Q
    |||||||||||||| |||||||||||||||||| || ||||||||| |||||||    
T  34925316 tatagcattgtagcatagcagaatttgaacaaactgctattttccacgatctgc 34925263  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 11501559 - 11501488
Alignment:
Q  207 tttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttgaacaaagtgttattttcc 278  Q
    ||||| ||||||||||| ||||  |||||||||| | |||| |||  ||||||||||||| |||||||||||    
T  11501559 tttgtcaaatagtggctatagtagcattatagcactctagcatagtggaatttgaacaaactgttattttcc 11501488  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 4541583 - 4541645
Alignment:
Q  163 ttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctct 225  Q
    ||||| |||||||||||||||||| ||| | |||||| || ||| |||| |||||||||||||    
T  4541583 ttgaacaaatcgttattgttttgcaatatgctatttggtacagtgttgtcaaatagtggctct 4541645  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 10363462 - 10363499
Alignment:
Q  254 gaatttgaacaaagtgttattttccatgatctgcgatt 291  Q
    ||||||||||||| || |||||||||||||||||||||    
T  10363462 gaatttgaacaaaatgctattttccatgatctgcgatt 10363499  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 21901327 - 21901372
Alignment:
Q  233 ttatagcattgtagcttagcagaatttgaacaaagtgttattttcc 278  Q
    ||||| ||||||||| ||||||||||| ||||||||| ||||||||    
T  21901327 ttataacattgtagcgtagcagaatttaaacaaagtgctattttcc 21901372  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 38434185 - 38434242
Alignment:
Q  234 tatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgcgatt 291  Q
    ||||||| |||| | |||||||||||||||||| || |||||||| || |||||||||    
T  38434185 tatagcactgtaacatagcagaatttgaacaaactgctattttccgtgttctgcgatt 38434242  T

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