View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15871_high_8 (Length: 339)
Name: NF15871_high_8
Description: NF15871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15871_high_8 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: scaffold0769 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 5410 - 5740
Alignment:
| Q |
1 |
acaaggcatgctcataattactgatattagattgatacttgagagttataactttcttaagtttttagtatcaatttgcatagatggttacaaactcact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5410 |
acaaggcatgctcataattactgatattagattgatacttgagagttataactttcttaagtttttagtatcaatttgcatagatggttacaaactcact |
5509 |
T |
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| Q |
101 |
tttcaattttaatctgtttctgcataattgaatctcaagccacgtcttatccttgagcatgatcagaaccctttttgatctttggcattttaatttctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5510 |
tttcaattttaatctgtttctgcataattgaatctcaagccacgtcttatccttgagcatgatcagaaccctttttgatctttggcattttaatttctaa |
5609 |
T |
|
| Q |
201 |
gaatatgtcattatatatgaatgcttgtatattcttccaatctgcatcctctggcatctcaagccttcttacatatccatttttccaccaatgaccacac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5610 |
gaatatgtcattatatatgaatgcttgtatattcttccaatctgcatcctctggcatctcaagccttcttacatatccatttttccaccaatgaccacac |
5709 |
T |
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| Q |
301 |
ctccaatcatttgtctttgagtctctctgct |
331 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
5710 |
ctccaatcatttgtctttgagtctctttgct |
5740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 34634504 - 34634174
Alignment:
| Q |
1 |
acaaggcatgctcataattactgatattagattgatacttgagagttataactttcttaagtttttagtatcaatttgcatagatggttacaaactcact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34634504 |
acaaggcatgctcataattactgatattagattgatacttgagagttataactttcttaagtttttagtatcaatttgcatagatggttacaaactcact |
34634405 |
T |
|
| Q |
101 |
tttcaattttaatctgtttctgcataattgaatctcaagccacgtcttatccttgagcatgatcagaaccctttttgatctttggcattttaatttctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34634404 |
tttcaattttaatctgtttctgcataattgaatctcaagccacgtcttatccttgagcatgatcagaaccctttttgatctttggcattttaatttctaa |
34634305 |
T |
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| Q |
201 |
gaatatgtcattatatatgaatgcttgtatattcttccaatctgcatcctctggcatctcaagccttcttacatatccatttttccaccaatgaccacac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34634304 |
gaatatgtcattatatatgaatgcttgtatattcttccaatctgcatcctctggcatctcaagccttcttacatatccatttttccaccaatgaccacac |
34634205 |
T |
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| Q |
301 |
ctccaatcatttgtctttgagtctctctgct |
331 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
34634204 |
ctccaatcatttgtctttgagtctctttgct |
34634174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 34641483 - 34641317
Alignment:
| Q |
1 |
acaaggcatgctcataattactgatattagattgatacttgagagttataactttcttaagtttttagtatcaattt----gcatagatggttacaaact |
96 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| | |
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| T |
34641483 |
acaaggcatgctcataattactgatattagattgatacttgagagttataactttctcaagtgtttagtatcaatttaattgcatagatggttacaaaat |
34641384 |
T |
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| Q |
97 |
cacttttcaattttaatctgtttctgcataattgaatctcaagccacgtcttatccttgagcatgat |
163 |
Q |
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||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
34641383 |
cacttttcaattttaatttgtttcttcatagttgaatctcaagccacgtcttatccttgagcatgat |
34641317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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