View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15872_high_1 (Length: 609)
Name: NF15872_high_1
Description: NF15872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15872_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 32959554 - 32959136
Alignment:
| Q |
1 |
atacttgattggaatgtaataataatgtaaagtctccatctatatatgttgagtcggtcagaatcagaatcaaaatca------cagtgagtcgtcgtaa |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
32959554 |
atacttgattggaatgtaataataatgtaaagtctccatctatatatgttgagtcggtcagaatcagaatcagaatcagaatcacagtgagtcgtcgtaa |
32959455 |
T |
|
| Q |
95 |
tttagataaaaattaaactttcaaacttcaataaatgaacggtaacaccgtgattttgcaaaactcgtggtgattcttatcaagcacttagacatagaca |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
32959454 |
tttagataaaaattaaactttcaaacttcaataaatgaacggtaacaccgtgattttgcaaaactcgcggtgattcttatcaagtacttagacatagaca |
32959355 |
T |
|
| Q |
195 |
agtgaaagatg-gagaaaagaagaagtgtgattggatgtagaagagagttgaaaaaagcatacagcatcaaatgaactctgccagtagttagagatattg |
293 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32959354 |
agtgaaagatgagagagaagtagaagtgtgattggatgtagaagagagttgaaaaaagcatacagcatcaaatgaactctgccagtagttagagatattg |
32959255 |
T |
|
| Q |
294 |
ggttcacattctgttggttctttaaagacccacttgtgacacttatcagatgcaactttccccattaacctgttccaaaacaaaatacacccaatcataa |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32959254 |
ggttcacattctgttggttctttaaagacccacttgtgacacttatcagatgcaactttccccatcaacctgttccaaaacaaaatacacccaatcataa |
32959155 |
T |
|
| Q |
394 |
catagtacaaagaacaaga |
412 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
32959154 |
catagtacaaagaacaaga |
32959136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 451 - 557
Target Start/End: Complemental strand, 32959097 - 32958995
Alignment:
| Q |
451 |
atacagttaagatttaaacagtaactcccttcacatgctattggagacaacaagaatcagatagatagatagaaagagaaggagagagaataaaagcaca |
550 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32959097 |
atacagttaagatttaaacagtaactctcttcacatgctattggagacaacaagaatcagataga----tagaaagagaaggagagagaataaaagcaca |
32959002 |
T |
|
| Q |
551 |
acatagt |
557 |
Q |
| |
|
||||||| |
|
|
| T |
32959001 |
acatagt |
32958995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University