View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15872_high_3 (Length: 527)
Name: NF15872_high_3
Description: NF15872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15872_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 58 - 512
Target Start/End: Complemental strand, 29650290 - 29649836
Alignment:
| Q |
58 |
agaaatagaaagagagagtcaaatgaatttaagaaaaagtggtgttagtttaatgtcaatgtcacataattaagagtatgaaaccctagccatgtgtgtg |
157 |
Q |
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| T |
29650290 |
agaaatagaaagagagagtcaaatgaatttaagaaaaagtggtgttagtttaatgtcaatgtcacataattaagagtatgaaaccctagccatgtgtgtg |
29650191 |
T |
|
| Q |
158 |
tgtataaaagagctagtttgcttcacaatcctaacaaacataacacaaaagcacattgatcatataatgaaaatggcttcttcatttagtttcttaacac |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29650190 |
tgtataaaagagctagtttgcttcacaatcctaacaaacataacacaaaagcacattgatcatataataaaaatggcttcttcatttagtttcttaacac |
29650091 |
T |
|
| Q |
258 |
tctttgtgttattttgtgtctacattcccataggcaccatgtctttctcaatgaaattaatcccacgagtaaactttgattcattgctctttcccaaaaa |
357 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
29650090 |
tctttgtgttattttgtgtctacattcccataggaaccatgtctttctcaatgaaattaatcccacgagtaaactttgattcaattctctttcccaaaaa |
29649991 |
T |
|
| Q |
358 |
catttctcttgaagagaaacacaataaattagtccaactctcaaaaattcatgctcttaagtatcaaatgaacaacaccaatgcaatatccccacaaact |
457 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29649990 |
catttctcttgaagagaaacacaatagattagtccaactctcaaaaattcatgctcttaagtatcaaatgaacaacaccaatgcaatatccccacaaact |
29649891 |
T |
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| Q |
458 |
tttcaaccacttgtgccaactatttctaacatatatgctgttgaaatgaggattg |
512 |
Q |
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| T |
29649890 |
tttcaaccacttgtcccaactatttctaacatatatgctgttgaaatgaggattg |
29649836 |
T |
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