View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15872_high_4 (Length: 443)

Name: NF15872_high_4
Description: NF15872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15872_high_4
NF15872_high_4
[»] chr8 (4 HSPs)
chr8 (13-356)||(18670764-18671107)
chr8 (13-338)||(13113515-13113840)
chr8 (13-267)||(13102673-13102928)
chr8 (13-267)||(13095343-13095598)


Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 356
Target Start/End: Complemental strand, 18671107 - 18670764
Alignment:
Q  13 aattacatggaatgctatgaatttgaatggcgattcgggctggaaaattccgttgttaatccatctttctggacgaaattcatcggcatcttccccccaa 112  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||||||| | |||||||||||     
T  18671107 aattacatggaatgctacgaatttgaatggtgattcaggctggaaaattccgttgttaatccatctttcaggacaaaattcatcgacgtcttccccccag 18671008  T
Q  113 atggaagacattcgacccatagcgtaggccaagtagtacactccatcgcccttttccagtttgtgtccatcgggaagaacatccggcgcatcagcagttc 212  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18671007 atggaagacattcgacccatagcataggccaagtagtacactccatcgcccttttccactttgtgtccatcgggaagaacatccggcgcatcagcagttc 18670908  T
Q  213 ttccatccttgaaaaatagtatcataacaagacacaaaaatatcatcaaaatctaacatgtaatgttgtttataggtgcattttaacatggaaatattta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18670907 ttccatccttgaaaaatagtatcataacaagacacaaaaatatcatcaaaatctaacatgtaatgttgtttataggtgcattttaacatggaaatattta 18670808  T
Q  313 gattacagtcacatgaaaggaaagcacttagggacacaagtctt 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18670807 gattacagtcacatgaaaggaaagcacttagggacacaagtctt 18670764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 13113515 - 13113840
Alignment:
Q  13 aattacatggaatgctatgaatttgaatggcgattcgggctggaaaattccgttgttaatccatctttctggacgaaattcatcggcatcttccccccaa 112  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||   ||||||||||||| ||||||||||||||||| ||||||||||||    
T  13113515 aattacatggaatgctacgaatttgaatggcgattcgggttggaaaattccgtctgtaatccatctttcaggacgaaattcatcggcgtcttccccccaa 13113614  T
Q  113 atggaagacattcgacccatagcgtaggccaagtagtacactccatcgcccttttccagtttgtgtccatcgggaagaacatccggcgcatcagcagttc 212  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13113615 atggaagacattcgacccatagcataggccaagtaatacactccatcgcccttttccagtttgtgtccatcgggaagaacatccggcgcatcagcagttc 13113714  T
Q  213 ttccatccttgaaaaatagtatcataacaagacacaaaaatatcatcaaaatctaacatgtaatgttgtttataggtgcattttaacatggaaatattta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13113715 ttccatccttgaaaaatagtatcataacaagacacaaaaatatcatcaaaatctaacatgtaatgttgtttataggtgcattttaacatggaaatattta 13113814  T
Q  313 gattacagtcacatgaaaggaaagca 338  Q
    ||||||||||||||||||||||||||    
T  13113815 gattacagtcacatgaaaggaaagca 13113840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 13102673 - 13102928
Alignment:
Q  13 aattacatggaatgctatgaatttgaatggcgattcgggctggaaaattccgttgttaatccatctttctggacgaaattcatcggcatcttccccccaa 112  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||     
T  13102673 aattacatggaatgctacgaatttgaatggtgattcgggctggaaaattccgttgttaatccatctttctggacgaaattcattggcgtcttccccccat 13102772  T
Q  113 atggaagacattcgacccatagcgtaggccaagtagtacactccatcgcccttttccagtttgtgtccatcgggaagaacatccggcgcatcagcagttc 212  Q
    ||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||||||||||||||| ||||||| ||| || ||||| |||||||    
T  13102773 atggaagacattcgacccatagcataggccaagtagttcactccgtctcccttttccagtttgtgtccatcaggaagaatatcaggtgcatctgcagttc 13102872  T
Q  213 ttccatccttgaaaaatagtatcataacaa-gacacaaaaatatcatcaaaatcta 267  Q
    |||||||||||||||||  ||||||| |||  |||||| ||| ||| |||||||||    
T  13102873 ttccatccttgaaaaatgatatcataccaatcacacaagaatgtcaacaaaatcta 13102928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 13095343 - 13095598
Alignment:
Q  13 aattacatggaatgctatgaatttgaatggcgattcgggctggaaaattccgttgttaatccatctttctggacgaaattcatcggcatcttccccccaa 112  Q
    ||||||||| |||||||  ||||||||||| |||||||| |||||||||||||   ||||||||||||| ||||||||||| ||||| ||||||||||||    
T  13095343 aattacatgaaatgctacaaatttgaatggtgattcgggttggaaaattccgtctgtaatccatctttcaggacgaaattcttcggcgtcttccccccaa 13095442  T
Q  113 atggaagacattcgacccatagcgtaggccaagtagtacactccatcgcccttttccagtttgtgtccatcgggaagaacatccggcgcatcagcagttc 212  Q
    ||||||||||||||||||||||| ||||||| ||||| |||| | || ||||||| ||||||||| ||||| ||||||| ||| || ||||| |||||||    
T  13095443 atggaagacattcgacccatagcataggccatgtagttcactgcgtctcccttttgcagtttgtggccatcaggaagaatatcaggtgcatccgcagttc 13095542  T
Q  213 ttccatccttgaaaaatagtatcataac-aagacacaaaaatatcatcaaaatcta 267  Q
    |||||||||||||||||||||||||| | ||||||||| ||| ||| |||||||||    
T  13095543 ttccatccttgaaaaatagtatcataccaaagacacaagaatgtcaacaaaatcta 13095598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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