View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15872_high_6 (Length: 415)
Name: NF15872_high_6
Description: NF15872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15872_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 26212170 - 26211784
Alignment:
| Q |
18 |
gtaggagggtataattagtggatattcctactattcttgtgcacaagaatccaatcccataaaaacatagaatcattttgatgtctcaagtgaaagtggc |
117 |
Q |
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| T |
26212170 |
gtaggagggtataattagtggatattcctactattcttgtgcacaagaatccaatcccataaaaacatagaatcattttgatgtctcaagtgaaagtggc |
26212071 |
T |
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| Q |
118 |
agaattaaatccatggtatctcccagctaaaccacacacatgcatggggaacatatgcaaggcagcatacggacacactaggtactagaaagtgttttgc |
217 |
Q |
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| T |
26212070 |
agaattaaatccatggtatctcccagctaaaccacacacatgcatggggaacatatgcaaggcagcatacggacacactaggtactagaaagtgttttgc |
26211971 |
T |
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| Q |
218 |
ttgataaagaatacccttatacttttaataatatttatcttttggtaccaaagttcaattattgccactagcccatgacccatattagtcataattataa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26211970 |
ttgataaagaatacccttatacttttaataatatttatcttttggtaccaaagttcaattattgccactagcccatgacccatatcagtcataattataa |
26211871 |
T |
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| Q |
318 |
aatttatttggaatatttgnnnnnnnatcaagggaaaacaaagacaaaacaaaggaacaactacattctcaatgacaccctcttcat |
404 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26211870 |
aatttatttggaatatttgtttttttatcaagggaaaacaaagacaaaacaaaggaacaactacattctcaatgacaccctcctcat |
26211784 |
T |
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