View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15872_high_7 (Length: 384)
Name: NF15872_high_7
Description: NF15872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15872_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 20210234 - 20210589
Alignment:
| Q |
18 |
accctccaaatgctgagtcactaagatgtctactttaggtggatatatggaagtnnnnnnnnnnnngggttctgcttgataaagcatgtagcttggacca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| ||| |||||||| |
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| T |
20210234 |
accctccaaatgctgagtcactaagatgtctactttaggtggatctatggaagtaaaaacaaaaaagggttttgcttgataaagcatttagtttggacca |
20210333 |
T |
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| Q |
118 |
caataattttacctaaagtagaattatgggaccatagaaacaaatcacaaaccttgctcatgtgtcatatgaatgtatgcaaacttaggcctttcaaacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20210334 |
caataattttacctaaagtagaattatgggaccatagaaacaaatcacaaaccttgctcatgtgtcatatgaatgtatgcaaacttaggcctttcaaacc |
20210433 |
T |
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| Q |
218 |
aatcattgctttccatagtgtagtgtagccttctgctaaaattgtctaatgggtgacacacatttaattatttgatagcaaatgtgggactttctttccc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20210434 |
aatcattgctttccatagtgtagtgtagccttctgctaaaattgtctaatggatgacacacatttaattatttgatagcaaatgtgggactttctttccc |
20210533 |
T |
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| Q |
318 |
tttctctattcacatacttctatagtgacatcaatatagtggagggccttcttcat |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20210534 |
tttctctattcacatacttctatagtgacatcaatatagtggagggccttcttcat |
20210589 |
T |
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