View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15872_high_8 (Length: 349)
Name: NF15872_high_8
Description: NF15872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15872_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 83 - 330
Target Start/End: Original strand, 390033 - 390280
Alignment:
| Q |
83 |
tttcaggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcatatggaagaaagaaggccacac |
182 |
Q |
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| T |
390033 |
tttcaggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcttatggaagaaagaaggccacac |
390132 |
T |
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| Q |
183 |
ttttagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttcttgttggtttgggtgt |
282 |
Q |
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| T |
390133 |
tcttagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttctcgttggtttgggtgt |
390232 |
T |
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| Q |
283 |
tggcatagcttctgttactgctcctgtctacattgcagaagtcgcacc |
330 |
Q |
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| T |
390233 |
tggcatagcttctgttactgctcctgtctacattgcagaagtcgcacc |
390280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 86 - 322
Target Start/End: Complemental strand, 52769076 - 52768840
Alignment:
| Q |
86 |
caggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcatatggaagaaagaaggccacacttt |
185 |
Q |
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| T |
52769076 |
caggaaacaattgtcagcatggcagtggctggtgcaattgttggagcagcagtaggtggttggatgaatgatcgttatggaagaaagaaggcaaccatca |
52768977 |
T |
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| Q |
186 |
tagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttcttgttggtttgggtgttgg |
285 |
Q |
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| T |
52768976 |
ttgcagatgttatctttattctcggagcaattgtcatggctgctgcgccagatccttatattctcatacttggccgtgttttggttggtttgggcgtggg |
52768877 |
T |
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| Q |
286 |
catagcttctgttactgctcctgtctacattgcagaa |
322 |
Q |
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| T |
52768876 |
tatagcttcagttactgctcccgtgtatattgcagaa |
52768840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 86 - 323
Target Start/End: Complemental strand, 52772015 - 52771778
Alignment:
| Q |
86 |
caggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcatatggaagaaagaaggccacacttt |
185 |
Q |
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| T |
52772015 |
caggaaacaatagtcagcatggcaatagctggtgcaatagttggagcagcaataggtggttggattaacgatgcttacggacgaaagaaggcaactctca |
52771916 |
T |
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| Q |
186 |
tagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttcttgttggtttgggtgttgg |
285 |
Q |
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| T |
52771915 |
tcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgatccttacattctcataatcggacgccttcttgttggtttaggtgtcgg |
52771816 |
T |
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| Q |
286 |
catagcttctgttactgctcctgtctacattgcagaag |
323 |
Q |
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| T |
52771815 |
cattgcctctgtcaccgctcccgtctacattgccgaag |
52771778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 322
Target Start/End: Complemental strand, 38014037 - 38013801
Alignment:
| Q |
86 |
caggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcatatggaagaaagaaggccacacttt |
185 |
Q |
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| T |
38014037 |
caggaaactattgtaagcatggcattggttggtgcaattattggagcagcaacaggtggctggattaatgatgcttttggacgtaagaaggcaacactta |
38013938 |
T |
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| Q |
186 |
tagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttcttgttggtttgggtgttgg |
285 |
Q |
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| T |
38013937 |
gtgctgatgttgtctttactcttggatcagttgttatggcttccgcgccagatgcatatgttctcatacttggccgtcttcttgttggcattggtgtggg |
38013838 |
T |
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| Q |
286 |
catagcttctgttactgctcctgtctacattgcagaa |
322 |
Q |
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| T |
38013837 |
tgtagcctctgtcacggctcctgtatatattgcagaa |
38013801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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