View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15872_high_9 (Length: 282)

Name: NF15872_high_9
Description: NF15872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15872_high_9
NF15872_high_9
[»] chr4 (3 HSPs)
chr4 (14-282)||(52001516-52001781)
chr4 (13-269)||(52011380-52011639)
chr4 (16-268)||(51987866-51988115)
[»] chr3 (1 HSPs)
chr3 (24-243)||(11749200-11749419)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 52001516 - 52001781
Alignment:
Q  14 catcagaaacaccatcaagcgaagcaagtccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52001516 catcagaaacaccatcaagcgaagcaagtccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcac 52001615  T
Q  114 aaaatcttcaccattcagttttgaaacccaagtaagggattcatcaacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52001616 aaaatcttcaccattcagttttgaaacccaagtaagggattcatcgacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgct 52001715  T
Q  214 ttagagaaaggagttggagaatcatcatcatcaatttcatgttccacatcatcatctttttctttattc 282  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  52001716 ttagagaaaggagttggaga---atcatcatcaacttcatgttccacatcatcatctttttctttattc 52001781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 52011380 - 52011639
Alignment:
Q  13 tcatcagaaacaccatcaagcgaagcaagtccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctca 112  Q
    ||||| |||||||||||||||||| | | ||||||| |||| || |||||||||||||||||||||||| |||  |||||||| |  || ||| ||||||    
T  52011380 tcatccgaaacaccatcaagcgaaaccattccatcagcatggttagcaagaattttaagagacatttcttgcaacgaaggaaccctaaacctttccctca 52011479  T
Q  113 caaaatcttcaccattcagttttgaaacccaagtaagggattcatcaacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgc 212  Q
    | |||||||| || ||   ||| | ||||||| ||| |||||| | ||||| |||  |||| |||||||| | ||||||||| ||||||||||||| |||    
T  52011480 ccaaatcttctccgtttcttttcggaacccaaataaaggattccttaacaaccccttttttcttgcttttcgcaattcgttcctgaatagctttgattgc 52011579  T
Q  213 tttagagaaaggagttggaga---atcatcatcatcaatttcatgttccacatcatcatc 269  Q
    || ||||||||| ||||||||   ||||||| |||||| |||||||||||||||||||||    
T  52011580 ttcagagaaaggtgttggagaagcatcatcaacatcaacttcatgttccacatcatcatc 52011639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 51988115 - 51987866
Alignment:
Q  16 tcagaaacaccatcaagcgaagcaagtccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaa 115  Q
    |||||||||| ||||||||||||||   ||||| |||| || |||||||| |||||  ||| |||| ||| |||||||||||  || |||| | |  | |    
T  51988115 tcagaaacactatcaagcgaagcaatggcatcagcatggttcgcaagaatgttaaggcacaattcttgcaatgaaggaacactaaagcttctcttttcca 51988016  T
Q  116 aatcttcaccattcagttttgaaacccaagtaagggattcatcaacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgcttt 215  Q
    |||||||  |||| | |||||||  |||| |||| ||||||||||||| |||  ||||  ||||||| |  |||| ||||||||||||||| | ||||||    
T  51988015 aatcttcttcattgaattttgaatgccaaataagagattcatcaacaagcccttttttcatgcttttggcgattctttcttgaatagctttaattgcttt 51987916  T
Q  216 agagaaaggagttggagaatcatcatcatcaatttcatgttccacatcatcat 268  Q
    ||||||||| ||||||||   | |||||||| |||||||||||| ||||||||    
T  51987915 agagaaaggtgttggaga---accatcatcagtttcatgttccatatcatcat 51987866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 11749200 - 11749419
Alignment:
Q  24 accatcaagcgaagcaagtccatcaacatgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttca 123  Q
    ||||||||| ||| | | ||||||||||||||| |||||   ||||| ||||| ||||  || |||||||||||| || ||||   |||| ||||||||     
T  11749200 accatcaagggaaaccaatccatcaacatgattagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttct 11749299  T
Q  124 ccattcagttttgaaacccaagtaagggattcatcaacaaacccccttttgttgcttttagtaattcgttcttgaatagctttgactgctttagagaaag 223  Q
    ||||||  ||| | ||||||| ||||||||||||||||||||||| |||| ||| |||| | ||||||||||||||||||||||| || ||  |||||||    
T  11749300 ccattccttttcggaacccaaataagggattcatcaacaaaccccattttcttggttttggcaattcgttcttgaatagctttgattgtttcggagaaag 11749399  T
Q  224 gagttggagaatcatcatca 243  Q
    ||||||||||| ||||||||    
T  11749400 gagttggagaaccatcatca 11749419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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