View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15872_low_12 (Length: 224)
Name: NF15872_low_12
Description: NF15872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15872_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 41753366 - 41753557
Alignment:
| Q |
18 |
tcaataagatgcgtaacattagcatgaggaatacaaatctacataactatcaaaagttttcatctaggattaagttgaccaagagaagattgcaacaatg |
117 |
Q |
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| T |
41753366 |
tcaataagatgcgtaacattagcatgaggaatacaaatctacataactatcaaaagttttcatccatgattaagttgaccaagagaagattgcaacaatg |
41753465 |
T |
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| Q |
118 |
tgtagacatcttgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctccggtttatcacatacactatatttcttttct |
209 |
Q |
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| T |
41753466 |
tatagacagcttgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctctggtttctcacatacactatatttcttttct |
41753557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 41757818 - 41757941
Alignment:
| Q |
86 |
attaagttgaccaagagaagattgcaacaatgtgtagacatcttgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctccggttta |
185 |
Q |
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| T |
41757818 |
attaagttgatggagagaagattgcaacagtgtgtagacagcatgccaaccattttgagaagggtgaacattgtcccaaaagaatgaaagctttggtttc |
41757917 |
T |
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| Q |
186 |
tcacatacactatatttcttttct |
209 |
Q |
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| T |
41757918 |
tcacataaactgtatttcttttct |
41757941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 41747115 - 41747192
Alignment:
| Q |
129 |
tgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctccggtttatcacatacactatatttcttt |
206 |
Q |
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| T |
41747115 |
tgccaaccattttgagaaggatggaaattgttccaatagaatgaaagccctggtttatcacatacactatatttcttt |
41747192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 41732412 - 41732525
Alignment:
| Q |
90 |
agttgaccaagagaagattgcaacaatgtgtagacatcttgccaaccattttgagaaggatgtacaccgtcccaaaagaatgaaagctccggtttatcac |
189 |
Q |
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| T |
41732412 |
agttgaccgagagaagactgcaacattaggtaaacttcataccaaccattttgagaagggtgaactgtgtcccaaaagagtgaagactcaagcttctcac |
41732511 |
T |
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| Q |
190 |
atacactatatttc |
203 |
Q |
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| T |
41732512 |
atacactatatttc |
41732525 |
T |
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