View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15872_low_2 (Length: 595)

Name: NF15872_low_2
Description: NF15872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15872_low_2
NF15872_low_2
[»] chr5 (18 HSPs)
chr5 (132-580)||(13837955-13838402)
chr5 (37-122)||(25983369-25983454)
chr5 (510-567)||(6927173-6927230)
chr5 (68-114)||(4204207-4204253)
chr5 (68-113)||(18538332-18538377)
chr5 (68-111)||(20192384-20192427)
chr5 (68-111)||(27532616-27532659)
chr5 (68-111)||(30192523-30192566)
chr5 (68-111)||(38968126-38968169)
chr5 (68-122)||(17965880-17965934)
chr5 (68-122)||(17966874-17966928)
chr5 (37-90)||(13665383-13665436)
chr5 (37-90)||(13707390-13707443)
chr5 (37-90)||(39742542-39742595)
chr5 (40-80)||(13581738-13581778)
chr5 (46-90)||(29430631-29430675)
chr5 (46-90)||(42098279-42098323)
chr5 (70-110)||(42912878-42912918)
[»] chr3 (24 HSPs)
chr3 (132-580)||(1293608-1294055)
chr3 (65-122)||(52515009-52515066)
chr3 (69-122)||(55176336-55176389)
chr3 (68-111)||(19341075-19341118)
chr3 (68-111)||(32593111-32593154)
chr3 (68-114)||(2062417-2062463)
chr3 (68-122)||(19341582-19341636)
chr3 (71-116)||(47443529-47443574)
chr3 (70-122)||(40877761-40877813)
chr3 (68-111)||(34691656-34691699)
chr3 (68-111)||(36817520-36817563)
chr3 (68-111)||(43478829-43478872)
chr3 (68-111)||(48246443-48246486)
chr3 (72-111)||(48566377-48566416)
chr3 (68-110)||(13896876-13896918)
chr3 (68-114)||(14043894-14043940)
chr3 (68-114)||(29918337-29918383)
chr3 (68-114)||(29929457-29929503)
chr3 (68-114)||(29967490-29967536)
chr3 (68-114)||(29978611-29978657)
chr3 (70-111)||(600543-600584)
chr3 (69-122)||(33471502-33471555)
chr3 (68-105)||(42148323-42148360)
chr3 (68-112)||(30256001-30256045)
[»] chr7 (17 HSPs)
chr7 (132-580)||(7975008-7975455)
chr7 (46-122)||(42024303-42024379)
chr7 (37-90)||(27919000-27919053)
chr7 (69-122)||(40142649-40142702)
chr7 (64-116)||(42795107-42795159)
chr7 (68-111)||(20353929-20353972)
chr7 (37-88)||(40142716-40142767)
chr7 (76-122)||(7953722-7953768)
chr7 (68-110)||(17838681-17838723)
chr7 (68-122)||(40141445-40141499)
chr7 (70-111)||(17834520-17834561)
chr7 (70-111)||(30791007-30791048)
chr7 (69-122)||(42025073-42025126)
chr7 (37-90)||(45350874-45350927)
chr7 (70-110)||(19804463-19804503)
chr7 (70-122)||(38266066-38266118)
chr7 (46-90)||(45351730-45351774)
[»] chr2 (18 HSPs)
chr2 (135-580)||(26543512-26543964)
chr2 (132-565)||(43312929-43313361)
chr2 (67-122)||(38779605-38779660)
chr2 (68-114)||(2271733-2271779)
chr2 (68-122)||(43258721-43258775)
chr2 (37-89)||(958662-958714)
chr2 (38-94)||(42176049-42176104)
chr2 (68-111)||(7189950-7189993)
chr2 (68-111)||(24601670-24601713)
chr2 (68-111)||(24612401-24612444)
chr2 (68-111)||(29407886-29407929)
chr2 (68-111)||(40156430-40156473)
chr2 (68-111)||(41183223-41183266)
chr2 (68-114)||(435373-435419)
chr2 (68-114)||(41008924-41008970)
chr2 (68-122)||(42177202-42177256)
chr2 (68-110)||(45137433-45137475)
chr2 (68-113)||(12908426-12908471)
[»] chr8 (19 HSPs)
chr8 (488-580)||(16422469-16422561)
chr8 (68-122)||(21406298-21406352)
chr8 (68-122)||(21800790-21800844)
chr8 (37-88)||(21406234-21406285)
chr8 (37-88)||(21800726-21800777)
chr8 (37-88)||(38135664-38135715)
chr8 (68-122)||(21835167-21835221)
chr8 (68-110)||(40039684-40039726)
chr8 (68-122)||(44727493-44727547)
chr8 (77-122)||(38134405-38134450)
chr8 (69-113)||(22577697-22577741)
chr8 (70-110)||(24249518-24249558)
chr8 (37-88)||(21835234-21835285)
chr8 (71-122)||(23512726-23512777)
chr8 (68-111)||(43262452-43262495)
chr8 (68-110)||(32383205-32383247)
chr8 (68-110)||(32437160-32437202)
chr8 (68-109)||(45133274-45133315)
chr8 (298-334)||(30803279-30803315)
[»] chr1 (26 HSPs)
chr1 (164-381)||(9901027-9901245)
chr1 (68-122)||(46216429-46216483)
chr1 (68-122)||(3941138-3941192)
chr1 (68-122)||(46217306-46217360)
chr1 (69-122)||(29425324-29425377)
chr1 (72-122)||(45943714-45943764)
chr1 (68-122)||(46043537-46043591)
chr1 (68-116)||(29424411-29424459)
chr1 (71-122)||(26606832-26606883)
chr1 (68-115)||(28456481-28456528)
chr1 (68-115)||(44336280-44336327)
chr1 (37-88)||(46043473-46043524)
chr1 (68-115)||(49875334-49875381)
chr1 (68-122)||(3939985-3940039)
chr1 (68-122)||(7820158-7820212)
chr1 (68-110)||(13761044-13761086)
chr1 (68-122)||(48751398-48751452)
chr1 (37-90)||(1167529-1167582)
chr1 (70-111)||(18609894-18609935)
chr1 (70-111)||(20353934-20353975)
chr1 (70-115)||(22524159-22524204)
chr1 (68-117)||(36072400-36072449)
chr1 (68-105)||(40056785-40056822)
chr1 (68-120)||(49502811-49502864)
chr1 (74-114)||(15695831-15695871)
chr1 (83-111)||(45977671-45977699)
[»] chr4 (19 HSPs)
chr4 (295-379)||(8264044-8264129)
chr4 (295-379)||(8277462-8277547)
chr4 (68-122)||(17342173-17342227)
chr4 (37-88)||(17343457-17343508)
chr4 (68-122)||(9473649-9473703)
chr4 (68-110)||(45971759-45971801)
chr4 (69-122)||(17343390-17343443)
chr4 (68-117)||(34503740-34503789)
chr4 (37-88)||(9473716-9473767)
chr4 (68-111)||(11565897-11565940)
chr4 (68-111)||(16984160-16984203)
chr4 (68-111)||(36480539-36480582)
chr4 (68-115)||(37022056-37022103)
chr4 (68-122)||(9472889-9472943)
chr4 (46-111)||(67601-67666)
chr4 (63-108)||(37015924-37015969)
chr4 (68-117)||(38368259-38368308)
chr4 (86-122)||(32537594-32537630)
chr4 (68-112)||(48256566-48256610)
[»] chr6 (17 HSPs)
chr6 (295-379)||(33032851-33032936)
chr6 (295-379)||(33051093-33051178)
chr6 (68-122)||(9048106-9048160)
chr6 (68-122)||(32223501-32223555)
chr6 (68-111)||(9049083-9049126)
chr6 (72-111)||(11157771-11157810)
chr6 (37-90)||(17596908-17596961)
chr6 (68-111)||(8193208-8193251)
chr6 (68-111)||(11840249-11840292)
chr6 (68-111)||(13388707-13388750)
chr6 (68-111)||(31146404-31146447)
chr6 (68-110)||(19757303-19757345)
chr6 (68-122)||(32222560-32222614)
chr6 (46-88)||(35241889-35241931)
chr6 (70-115)||(3380803-3380848)
chr6 (68-108)||(32643523-32643563)
chr6 (82-122)||(35241953-35241993)
[»] scaffold0794 (1 HSPs)
scaffold0794 (68-111)||(5302-5345)
[»] scaffold0065 (1 HSPs)
scaffold0065 (68-111)||(65349-65392)
[»] scaffold0016 (1 HSPs)
scaffold0016 (68-115)||(68409-68456)
[»] scaffold1500 (1 HSPs)
scaffold1500 (68-122)||(747-801)
[»] scaffold0012 (1 HSPs)
scaffold0012 (68-122)||(232820-232874)


Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 132 - 580
Target Start/End: Complemental strand, 13838402 - 13837955
Alignment:
Q  132 atcggcacttaagtaccgaggagttgtaaacaccacacccttctttcttcattgtcttcttcacaaatatccctatctctagtttcttctctatactttt 231  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||    
T  13838402 atcggcacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcttcttcacaaatatctcaatctctagtttcttctctatgctttt 13838303  T
Q  232 cctttttgcaatcttaattattccttctcaattataacattgtataaagctattgatttcataggctatgatgaatcatagagatagtcatgcaccactc 331  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  13838302 tctttttgcaatcttaattattccttctcaattataacatagtataaagctattaatttcataggctatgatgaatcatagagatagtcatgcaccactt 13838203  T
Q  332 tgatttcatgtgctgataactttctcatacccattatttttctgagccttttatttcttcaattatcatagttcttttgaatcaacgccacaccctttta 431  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  13838202 tgatttcctgtgctgataactttcttatacccattatttttcagagccttttattccttcaattatcatagttcttttgactcaacgccacaccctttta 13838103  T
Q  432 tttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcattttccaatttatttgtttcaata 531  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13838102 tttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcattttccaatttatttgtttcaatg 13838003  T
Q  532 aatctaatagaatttacaatctttaatttgtgtttggaggtggattttg 580  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  13838002 aatct-atagaatttacaatctttaatttgtgtttggatgtggattttg 13837955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 25983369 - 25983454
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||||||| |||||||| || |||| |||||||||||||||||| |||||||||| ||| ||||||||| ||||| ||||||||||    
T  25983369 gaaacactagtaaaataccacaataccccctctgcagttaactaccgaggaaaacatcggtagttaactaccgaggaaacttcaaa 25983454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 510 - 567
Target Start/End: Complemental strand, 6927230 - 6927173
Alignment:
Q  510 ttccaatttatttgtttcaataaatctaatagaatttacaatctttaatttgtgtttg 567  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||    
T  6927230 ttccaatttatttgtttcaatgaatcaaatcgaatttacaatctttaatttgtttttg 6927173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 4204253 - 4204207
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaa 114  Q
    |||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  4204253 ctgcagttaactgtcgaggaaaacctcggtagttaactgccgagaaa 4204207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 18538377 - 18538332
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaa 113  Q
    ||||||||||||  |||||||||||||| |||||||||||||||||    
T  18538377 ctgcagttaactgccgaggaaaacttcggtagttaactgccgagaa 18538332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 20192384 - 20192427
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||  |||||||||||||||||||||| |||||||    
T  20192384 ctgcagttaactgccgaggaaaacttcgatagttaaatgccgag 20192427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 27532659 - 27532616
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    |||||||||||||||||||||||| |||  ||||||||||||||    
T  27532659 ctgcagttaactatcgaggaaaacctcggcagttaactgccgag 27532616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 30192523 - 30192566
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    |||||||||||| |||||||||||||||  ||||||||||||||    
T  30192523 ctgcagttaactgtcgaggaaaacttcggcagttaactgccgag 30192566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 38968126 - 38968169
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||  |||||||||| |||||||||||||||||||    
T  38968126 ctgcagttaactgccgaggaaaacctcgatagttaactgccgag 38968169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 17965880 - 17965934
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||  |||||||||| ||| ||||||| ||||||| ||||||||||    
T  17965880 ctgcagttaactgccgaggaaaacatcggtagttaattgccgaggaaacttcaaa 17965934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 17966928 - 17966874
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||| |||||||||  ||| ||||||||||| ||| ||||||||||    
T  17966928 ctgcagttaactaccgaggaaaatctcggtagttaactgctgaggaaacttcaaa 17966874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 13665383 - 13665436
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaaaa 90  Q
    |||||||  |||||||||||||||| |||||||| ||||||||  |||||||||    
T  13665383 gaaacaccagtaaaatatcaaaataccccctctgtagttaactgccgaggaaaa 13665436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 13707390 - 13707443
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaaaa 90  Q
    |||||||  |||||||| ||||||| |||||||||||||||||  |||||||||    
T  13707390 gaaacaccagtaaaataccaaaataccccctctgcagttaactgccgaggaaaa 13707443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 39742542 - 39742595
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaaaa 90  Q
    |||||||  |||||||| ||||||| |||||||||||||||||  |||||||||    
T  39742542 gaaacaccagtaaaataccaaaataccccctctgcagttaactgccgaggaaaa 39742595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 13581778 - 13581738
Alignment:
Q  40 acactcgtaaaatatcaaaatatcccctctgcagttaacta 80  Q
    ||||| |||||||||||||||||||| || |||||||||||    
T  13581778 acactagtaaaatatcaaaatatcccttcggcagttaacta 13581738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 29430675 - 29430631
Alignment:
Q  46 gtaaaatatcaaaatatcccctctgcagttaactatcgaggaaaa 90  Q
    |||||||| ||||||| |||||||||||||||||  |||||||||    
T  29430675 gtaaaataccaaaataccccctctgcagttaactgccgaggaaaa 29430631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 42098279 - 42098323
Alignment:
Q  46 gtaaaatatcaaaatatcccctctgcagttaactatcgaggaaaa 90  Q
    |||||||| |||||||||| ||||||||||||||  |||||||||    
T  42098279 gtaaaataccaaaatatcctctctgcagttaactgccgaggaaaa 42098323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 42912918 - 42912878
Alignment:
Q  70 gcagttaactatcgaggaaaacttcgatagttaactgccga 110  Q
    ||||||||||| ||||||||||||||  |||||||||||||    
T  42912918 gcagttaactaccgaggaaaacttcggcagttaactgccga 42912878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 132 - 580
Target Start/End: Complemental strand, 1294055 - 1293608
Alignment:
Q  132 atcggcacttaagtaccgaggagttgtaaacaccacacccttctttcttcattgtcttcttcacaaatatccctatctctagtttcttctctatactttt 231  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||    
T  1294055 atcggcacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcttcttcacaaatatctcaatctctagtttcttctctatgctttt 1293956  T
Q  232 cctttttgcaatcttaattattccttctcaattataacattgtataaagctattgatttcataggctatgatgaatcatagagatagtcatgcaccactc 331  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  1293955 tctttttgcaatcttaattattccttctcaattataacatagtataaagctattaatttcataggctatgatgaatcatagagatagtcatgcaccactt 1293856  T
Q  332 tgatttcatgtgctgataactttctcatacccattatttttctgagccttttatttcttcaattatcatagttcttttgaatcaacgccacaccctttta 431  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  1293855 tgatttcctgtgctgataactttcttatacccattatttttcagagtcttttattccttcaattatcatagttcttttgactcaacgccacaccctttta 1293756  T
Q  432 tttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcattttccaatttatttgtttcaata 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  1293755 tttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacaattttcttcaattcattttccaatttatttgtttcaatg 1293656  T
Q  532 aatctaatagaatttacaatctttaatttgtgtttggaggtggattttg 580  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  1293655 aatct-atagaatttacaatctttaatttgtgtttggatgtggattttg 1293608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 52515066 - 52515009
Alignment:
Q  65 cctctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||| ||||||||||||||||||||||||||| |||| ||||||||| |||| |||||    
T  52515066 cctcggcagttaactatcgaggaaaacttcgacagttcactgccgaggaaacctcaaa 52515009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 55176389 - 55176336
Alignment:
Q  69 tgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||||||||||||||||||||||||||  |||||||||||||| |||| |||||    
T  55176389 tgcagttaactatcgaggaaaacttcggcagttaactgccgaggaaacctcaaa 55176336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 19341075 - 19341118
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||    
T  19341075 ctgcagttaactaccgaggaaaacttcgacagttaactgccgag 19341118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 32593154 - 32593111
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||  ||||||||||||||||||||||||||||||    
T  32593154 ctgcagttaacttccgaggaaaacttcgatagttaactgccgag 32593111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 2062417 - 2062463
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaa 114  Q
    |||||||||||| |||||||||||||||  |||||||||||||||||    
T  2062417 ctgcagttaactgtcgaggaaaacttcggcagttaactgccgagaaa 2062463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 19341636 - 19341582
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||| ||||||||||||||  |||||||||||||| |||| |||||    
T  19341636 ctgcagttaactaccgaggaaaacttcggcagttaactgccgaggaaacctcaaa 19341582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 47443529 - 47443574
Alignment:
Q  71 cagttaactatcgaggaaaacttcgatagttaactgccgagaaaac 116  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  47443529 cagttaactttcgaggaaaacttcggcagttaactgccgagaaaac 47443574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 40877813 - 40877761
Alignment:
Q  70 gcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||| ||||| ||||||||||||||  |||||||||||||| ||||||||||    
T  40877813 gcagtaaactaccgaggaaaacttcggcagttaactgccgaggaaacttcaaa 40877761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 34691656 - 34691699
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    |||||||||||| ||||||||||| ||| |||||||||||||||    
T  34691656 ctgcagttaactgtcgaggaaaacctcggtagttaactgccgag 34691699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 36817563 - 36817520
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    |||||||||||||||||||||| | ||| |||||||||||||||    
T  36817563 ctgcagttaactatcgaggaaatcctcggtagttaactgccgag 36817520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 43478872 - 43478829
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||  |||||||||||||| |||||||||||||||    
T  43478872 ctgcagttaactgccgaggaaaacttcggtagttaactgccgag 43478829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 48246443 - 48246486
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    |||||||||||| ||||||||||| ||| |||||||||||||||    
T  48246443 ctgcagttaactgtcgaggaaaacctcggtagttaactgccgag 48246486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 48566377 - 48566416
Alignment:
Q  72 agttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  48566377 agttaactaccgaggaaaacttcggtagttaactgccgag 48566416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 13896918 - 13896876
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccga 110  Q
    |||||||||||| ||||||||||| ||| ||||||||||||||    
T  13896918 ctgcagttaactgtcgaggaaaacctcggtagttaactgccga 13896876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 14043940 - 14043894
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaa 114  Q
    ||||||||||||  ||||||||||||||  |||||||||||||||||    
T  14043940 ctgcagttaactgccgaggaaaacttcggcagttaactgccgagaaa 14043894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 29918383 - 29918337
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaa 114  Q
    ||||||||||||  |||||||||| ||| ||||||||||||||||||    
T  29918383 ctgcagttaactgccgaggaaaacctcgttagttaactgccgagaaa 29918337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 29929457 - 29929503
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaa 114  Q
    ||||| ||||||  |||||||||| ||||||||||||||||||||||    
T  29929457 ctgcaattaactgccgaggaaaacctcgatagttaactgccgagaaa 29929503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 29967536 - 29967490
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaa 114  Q
    ||||||||||||  |||||||||| ||| ||||||||||||||||||    
T  29967536 ctgcagttaactgccgaggaaaacctcgttagttaactgccgagaaa 29967490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 29978611 - 29978657
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaa 114  Q
    ||||| ||||||  |||||||||| ||||||||||||||||||||||    
T  29978611 ctgcaattaactgccgaggaaaacctcgatagttaactgccgagaaa 29978657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 600584 - 600543
Alignment:
Q  70 gcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    |||||||||| ||||||||||| ||| |||||||||||||||    
T  600584 gcagttaactgtcgaggaaaacctcggtagttaactgccgag 600543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 33471502 - 33471555
Alignment:
Q  69 tgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||| |||||||||||||| |||| || ||||||| |||| ||||||||||    
T  33471502 tgcagttgactatcgaggaaaatttcggtaattaactgtcgaggaaacttcaaa 33471555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 42148323 - 42148360
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaact 105  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  42148323 ctgcagttaactatcgaggaaaacttcgaaagtaaact 42148360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 30256045 - 30256001
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgaga 112  Q
    ||||||||||||  |||||||||| ||||||||||||||| ||||    
T  30256045 ctgcagttaactgccgaggaaaacctcgatagttaactgctgaga 30256001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 132 - 580
Target Start/End: Original strand, 7975008 - 7975455
Alignment:
Q  132 atcggcacttaagtaccgaggagttgtaaacaccacacccttctttcttcattgtcttcttcacaaatatccctatctctagtttcttctctatactttt 231  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| |||||    
T  7975008 atcgacacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcttcttcacaaatatctcactctctagtttcttctctatgctttt 7975107  T
Q  232 cctttttgcaatcttaattattccttctcaattataacattgtataaagctattgatttcataggctatgatgaatcatagagatagtcatgcaccactc 331  Q
     |||||||| |||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  7975108 tctttttgcgatcttaattattccttcttaattataacatagtataaagctattaatttcataggctatgatgaatcatagagatagtcatgcaccactt 7975207  T
Q  332 tgatttcatgtgctgataactttctcatacccattatttttctgagccttttatttcttcaattatcatagttcttttgaatcaacgccacaccctttta 431  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||    
T  7975208 tgatttcctgtgctgataactttcttatacccattatttttcagagccttttattccttcaattatgatagttcttttgactcaacgccacaccctttta 7975307  T
Q  432 tttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcattttccaatttatttgtttcaata 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7975308 tttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcattttccaatttatttgtttcaata 7975407  T
Q  532 aatctaatagaatttacaatctttaatttgtgtttggaggtggattttg 580  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  7975408 aatct-atagaatttacaatctttaatttgtgtttggatgtggattttg 7975455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 42024303 - 42024379
Alignment:
Q  46 gtaaaatatcaaaatatcccctctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||| |||||||||  |||| ||||||||||||||||||| |||| ||||||| ||| ||| ||||||||||    
T  42024303 gtaaaatattaaaatatcctatctgtagttaactatcgaggaaaatttcggtagttaattgctgaggaaacttcaaa 42024379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 27919000 - 27919053
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaaaa 90  Q
    |||||||  |||||||||||||||| |||||||| |||||||| ||||||||||    
T  27919000 gaaacaccagtaaaatatcaaaataccccctctgtagttaactgtcgaggaaaa 27919053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 40142702 - 40142649
Alignment:
Q  69 tgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||||||||||| ||| |||||||||  || |||||||||||||||||||||||    
T  40142702 tgcagttaactaccgaagaaaacttctgtaattaactgccgagaaaacttcaaa 40142649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 42795159 - 42795107
Alignment:
Q  64 ccctctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaac 116  Q
    ||||| ||||||||||  ||||||||||||||  |||||||||||||||||||    
T  42795159 ccctcggcagttaactgccgaggaaaacttcggcagttaactgccgagaaaac 42795107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 20353972 - 20353929
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    |||||||||||||||||||||||| ||  |||||||||||||||    
T  20353972 ctgcagttaactatcgaggaaaacctcagtagttaactgccgag 20353929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 40142767 - 40142716
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaa 88  Q
    |||||||| |||||||| ||||||| ||||||||||||||| | ||||||||    
T  40142767 gaaacactagtaaaataccaaaataccccctctgcagttaattgtcgaggaa 40142716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 7953768 - 7953722
Alignment:
Q  76 aactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||| ||||||||||||||  |||||||||||||| ||||||||||    
T  7953768 aactaccgaggaaaacttcggcagttaactgccgaggaaacttcaaa 7953722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 17838681 - 17838723
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccga 110  Q
    ||||||| ||||| |||||||||| ||||||||||||||||||    
T  17838681 ctgcagtaaactaccgaggaaaacctcgatagttaactgccga 17838723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 40141445 - 40141499
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||| |||| ||||||| | ||||||| ||||||| ||||||||||    
T  40141445 ctgcagttaactaccgagaaaaactttggtagttaattgccgaggaaacttcaaa 40141499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 17834520 - 17834561
Alignment:
Q  70 gcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||  |||||||||||||| |||||||||||||||    
T  17834520 gcagttaactgccgaggaaaacttcggtagttaactgccgag 17834561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 30791048 - 30791007
Alignment:
Q  70 gcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||| |||||||||| ||| |||||||||||||||    
T  30791048 gcagttaactaccgaggaaaacctcggtagttaactgccgag 30791007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 42025126 - 42025073
Alignment:
Q  69 tgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||  ||| ||||||||| |||||||||| |||| ||||||||||    
T  42025126 tgcagttaactacagagaaaaacttcggtagttaactgtcgaggaaacttcaaa 42025073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 45350874 - 45350927
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaaaa 90  Q
    |||||||  |||||||| ||||||| |||||||||||||||||  |||||||||    
T  45350874 gaaacaccagtaaaataccaaaataccccctctgcagttaactgccgaggaaaa 45350927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 19804503 - 19804463
Alignment:
Q  70 gcagttaactatcgaggaaaacttcgatagttaactgccga 110  Q
    |||||||||||||||||||  |||||| |||||||||||||    
T  19804503 gcagttaactatcgaggaattcttcgacagttaactgccga 19804463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 38266118 - 38266066
Alignment:
Q  70 gcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||| |||||||||||||||| |||| | |||||||||| | ||||||||||    
T  38266118 gcagtaaactatcgaggaaaacctcgacatttaactgccgcggaaacttcaaa 38266066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 45351774 - 45351730
Alignment:
Q  46 gtaaaatatcaaaatatcccctctgcagttaactatcgaggaaaa 90  Q
    ||||||||  |||||| ||||||||||||||||| ||||||||||    
T  45351774 gtaaaatactaaaataccccctctgcagttaactgtcgaggaaaa 45351730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 135 - 580
Target Start/End: Complemental strand, 26543964 - 26543512
Alignment:
Q  135 ggcacttaagtaccgaggagttgtaaacaccacacccttctttcttcattgtcttcttcacaaatatccctatctctagtttcttctctatacttttcct 234  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||| ||    
T  26543964 ggcacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcttcttcacaaatatctcaatctctagtttcttctctatgctttttct 26543865  T
Q  235 ttttgcaatcttaattattccttctcaattataacatt--------gtataaagctattgatttcataggctatgatgaatcatagagatagtcatgcac 326  Q
    |||||||||||||||||||| ||||||||||||||||         ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26543864 ttttgcaatcttaattattcattctcaattataacataataacatagtataaagctattaatttcataggctatgatgaatcatagagatagtcatgcac 26543765  T
Q  327 cactctgatttcatgtgctgataactttctcatacccattatttttctgagccttttatttcttcaattatcatagttcttttgaatcaacgccacaccc 426  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  26543764 cactttgatttcctgtgctgataactttcttatacccattatttttcagagccttttattccttcaattatcatagttcttttgactcaacgccacaccc 26543665  T
Q  427 ttttatttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcattttccaatttatttgttt 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26543664 ttttatttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcattttccaatttatttgttt 26543565  T
Q  527 caataaatctaatagaatttacaatctttaatttgtgtttggaggtggattttg 580  Q
    |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  26543564 caatgaatct-atagaatttacaatctttaatttgtgtttggatgtggattttg 26543512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 132 - 565
Target Start/End: Complemental strand, 43313361 - 43312929
Alignment:
Q  132 atcggcacttaagtaccgaggagttgtaaacaccacacccttctttcttcattgtcttcttcacaaatatccctatctctagtttcttctctatactttt 231  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||    
T  43313361 atcggcacttaagtaccgaggagttgtaaacgccacacccttctttcttcattgtcttcttcacaaatatctcaatctctagtttcttctctatgctttt 43313262  T
Q  232 cctttttgcaatcttaattattccttctcaattataacattgtataaagctattgatttcataggctatgatgaatcatagagatagtcatgcaccactc 331  Q
     |||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  43313261 tctttttgcaatcttaattattcattctcaattataacatagtataaagctattaatttcataggctatgatgaatcatagagatagtcatgcaccactt 43313162  T
Q  332 tgatttcatgtgctgataactttctcatacccattatttttctgagccttttatttcttcaattatcatagttcttttgaatcaacgccacaccctttta 431  Q
    | ||||| ||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  43313161 taatttcctgtgctgataactttcttatacccattatttttcagagtcttttattccttcaattatcatagttcttttgactcaacgccacaccctttta 43313062  T
Q  432 tttccttcatttttctgatggttctcccatcagcaattaacttgtgtcaattttctgaacagttttcttcaattcattttccaatttatttgtttcaata 531  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  43313061 tttccttcatttttctgatggttcttccatcagcaattaacttgtgtcaattttttgaacagttttcttcaattcattttccaatttatttgtttcaatg 43312962  T
Q  532 aatctaatagaatttacaatctttaatttgtgtt 565  Q
    ||||| ||||||||||||||||| ||||| ||||    
T  43312961 aatct-atagaatttacaatcttcaatttctgtt 43312929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 38779660 - 38779605
Alignment:
Q  67 tctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||||||| ||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  38779660 tctgcagtaaactaccgaggaaaacttcgacagttaactgccgaggaaacttcaaa 38779605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 2271779 - 2271733
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaa 114  Q
    |||||||||||| |||||||||||||||  |||||||||||||||||    
T  2271779 ctgcagttaactgtcgaggaaaacttcggcagttaactgccgagaaa 2271733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 43258775 - 43258721
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||| ||| |||||||| | ||||||||||||||| ||||||||||    
T  43258775 ctgcagttaactaccgaagaaaactttggtagttaactgccgaggaaacttcaaa 43258721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 958714 - 958662
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaaa 89  Q
    |||||||  |||||||| ||||||| |||||||||||||||||| ||||||||    
T  958714 gaaacaccagtaaaataccaaaataccccctctgcagttaactaccgaggaaa 958662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 42176049 - 42176104
Alignment:
Q  38 aaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaaaacttc 94  Q
    ||||||| |||||||| ||||||| ||||||||||||||||| |||| |||||||||    
T  42176049 aaacactagtaaaataccaaaataccccctctgcagttaactgtcga-gaaaacttc 42176104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 7189993 - 7189950
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||  |||||||||||||| |||||||||||||||    
T  7189993 ctgcagttaactgccgaggaaaacttcggtagttaactgccgag 7189950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 24601670 - 24601713
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||    
T  24601670 ctgcagttaactaccgaggaaatcttcggtagttaactgccgag 24601713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 24612444 - 24612401
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||    
T  24612444 ctgcagttaactaccgaggaaatcttcggtagttaactgccgag 24612401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 29407929 - 29407886
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||    
T  29407929 ctgcagttaactaacgaggaaaacttcggcagttaactgccgag 29407886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 40156430 - 40156473
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||    
T  40156430 ctgcagttaactgacgaggaaaacttcgacagttaactgccgag 40156473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 41183266 - 41183223
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||| |||||||||| ||| |||||||||||||||    
T  41183266 ctgcagttaactaccgaggaaaacctcggtagttaactgccgag 41183223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 435373 - 435419
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaa 114  Q
    ||||||| ||||| |||||||||| ||||||||| ||||||||||||    
T  435373 ctgcagtaaactaccgaggaaaacctcgatagttgactgccgagaaa 435419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 41008970 - 41008924
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaa 114  Q
    ||||| ||||||  |||||||||||||| ||||||||||||||||||    
T  41008970 ctgcatttaactgccgaggaaaacttcggtagttaactgccgagaaa 41008924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 42177256 - 42177202
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||| |||||||| | |||||||||||| ||||||||||||||| |||| |||||    
T  42177256 ctgctgttaactacctaggaaaacttcggtagttaactgccgaggaaacgtcaaa 42177202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 45137475 - 45137433
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccga 110  Q
    ||||||||||||  ||| |||||||||||||||||||||||||    
T  45137475 ctgcagttaactgccgatgaaaacttcgatagttaactgccga 45137433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 12908471 - 12908426
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaa 113  Q
    ||||||||||||  |||||||||| | |||||||||||||||||||    
T  12908471 ctgcagttaactgccgaggaaaaccttgatagttaactgccgagaa 12908426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 488 - 580
Target Start/End: Complemental strand, 16422561 - 16422469
Alignment:
Q  488 gaacagttttcttcaattcattttccaatttatttgtttcaataaatctaatagaatttacaatctttaatttgtgtttggaggtggattttg 580  Q
    |||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  16422561 gaacagttttcttccattcatttttcaatttatttgtttcaatgaatctaatagaatttacaatctttaatttgtttttggaggtgaattttg 16422469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 21406298 - 21406352
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  21406298 ctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaaacttcaaa 21406352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 21800790 - 21800844
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  21800790 ctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaaacttcaaa 21800844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 21406234 - 21406285
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaa 88  Q
    |||||||| |||||||| |||||||||||||||||||||||||  |||||||    
T  21406234 gaaacactagtaaaataccaaaatatcccctctgcagttaactgccgaggaa 21406285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 21800726 - 21800777
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaa 88  Q
    |||||||| |||||||| |||||||||||||||||||||||||  |||||||    
T  21800726 gaaacactagtaaaataccaaaatatcccctctgcagttaactgccgaggaa 21800777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 38135715 - 38135664
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaa 88  Q
    |||||||  ||||||||||||||||||||||||||||||||||  |||||||    
T  38135715 gaaacaccagtaaaatatcaaaatatcccctctgcagttaactgccgaggaa 38135664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 21835221 - 21835167
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||| |||||||||||||| || |||||||||||| ||||| ||||    
T  21835221 ctgcagttaactaccgaggaaaacttcggtatttaactgccgaggaaactacaaa 21835167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 40039726 - 40039684
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccga 110  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  40039726 ctgcagttaactaccgaggaaaacctcgatagttaactgccga 40039684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 44727547 - 44727493
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||| |||||||||||||| |||||||||  |||| ||||||||||    
T  44727547 ctgcagttaactaccgaggaaaacttcggtagttaactttcgaggaaacttcaaa 44727493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 38134405 - 38134450
Alignment:
Q  77 actatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||||    
T  38134405 actaccgaggaaaacttcgatagttaactgccgaggaaaattcaaa 38134450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 22577697 - 22577741
Alignment:
Q  69 tgcagttaactatcgaggaaaacttcgatagttaactgccgagaa 113  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||||    
T  22577697 tgcagttaactgtcgaggaaaacctcggtagttaactgccgagaa 22577741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 24249518 - 24249558
Alignment:
Q  70 gcagttaactatcgaggaaaacttcgatagttaactgccga 110  Q
    |||||||||| |||||||||||||||| |||||||||||||    
T  24249518 gcagttaactttcgaggaaaacttcgacagttaactgccga 24249558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 21835285 - 21835234
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaa 88  Q
    |||||||| |||||||| ||||||| ||||||||||||||| | ||||||||    
T  21835285 gaaacactagtaaaataccaaaataccccctctgcagttaaatgtcgaggaa 21835234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 23512777 - 23512726
Alignment:
Q  71 cagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||| ||||||||||||||||||||  | |||||||||||| ||||||||||    
T  23512777 cagtaaactatcgaggaaaacttcggcacttaactgccgaggaaacttcaaa 23512726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 43262452 - 43262495
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||  |||||||||||||| |||||||||||||||    
T  43262452 ctgcagttaactgccgaggaaaacttcggtagttaactgccgag 43262495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 32383247 - 32383205
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccga 110  Q
    ||||||||||||| |||||||||| ||| ||||||||||||||    
T  32383247 ctgcagttaactaccgaggaaaacctcggtagttaactgccga 32383205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 32437202 - 32437160
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccga 110  Q
    ||||||||||||| |||||||||| ||| ||||||||||||||    
T  32437202 ctgcagttaactaccgaggaaaacctcggtagttaactgccga 32437160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 45133315 - 45133274
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccg 109  Q
    ||||||||||||| |||||||||||||| | |||||||||||    
T  45133315 ctgcagttaactaccgaggaaaacttcggttgttaactgccg 45133274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 30803315 - 30803279
Alignment:
Q  298 tatgatgaatcatagagatagtcatgcaccactctga 334  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  30803315 tatgatgaatcatagatatagtcatgaaccactctga 30803279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 164 - 381
Target Start/End: Complemental strand, 9901245 - 9901027
Alignment:
Q  164 ccacacccttctttcttcattgtcttcttcacaaatatccctatctct-agtttcttctctatacttttcctt-tttgcaatcttaatta-ttccttctc 260  Q
    ||||||||||||| ||||||| ||||| |||||||| || |||||||  ||||| ||||||||| ||||| || |||  ||||||  ||| ||  |||||    
T  9901245 ccacacccttcttccttcattttcttcatcacaaatctctctatctcacagttttttctctata-ttttcattctttataatcttttttacttttttctc 9901147  T
Q  261 aattataacattgtataaagctattgatttcataggctatgatgaatcatagagatagtcatgcaccactctgatttcatgtgctgataactttctcata 360  Q
    |||||||||||  |||   ||| || |||  || |||||||||||||  ||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  9901146 aattataacatgttatgc-gcttttaattatattggctatgatgaattttagagatagtcatgcaccactctgatttcctgtgctgataattttctcata 9901048  T
Q  361 cccattatttttctgagcctt 381  Q
    |||||||||||||||||||||    
T  9901047 cccattatttttctgagcctt 9901027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 46216429 - 46216483
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  46216429 ctgcagttaactatcgaggaaaacttcggtagttaactgccgaggaaacttcaaa 46216483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 3941192 - 3941138
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  3941192 ctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaaacttcaaa 3941138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 46217360 - 46217306
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  46217360 ctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaaacttcaaa 46217306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 29425377 - 29425324
Alignment:
Q  69 tgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  29425377 tgcagttaactaccgaggaaaacttcggtagttaactgccgaggaaacttcaaa 29425324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 45943764 - 45943714
Alignment:
Q  72 agttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  45943764 agttaactaccgaggaaaacttcggtagttaactgccgaggaaacttcaaa 45943714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 46043537 - 46043591
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||| ||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  46043537 ctgcaattaactaccgaggaaaacttcggtagttaactgccgaggaaacttcaaa 46043591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 29424411 - 29424459
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaac 116  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| ||||    
T  29424411 ctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaaac 29424459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 26606832 - 26606883
Alignment:
Q  71 cagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||||||||| ||||||||||||||  |||||||||||||| |||| |||||    
T  26606832 cagttaactaccgaggaaaacttcggcagttaactgccgaggaaacctcaaa 26606883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 28456481 - 28456528
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaa 115  Q
    ||||||||||||||||||||||||||||  ||| |||| |||||||||    
T  28456481 ctgcagttaactatcgaggaaaacttcggcagtaaactaccgagaaaa 28456528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 44336280 - 44336327
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaa 115  Q
    ||||||||||||  |||||||||| ||| |||||||||||||||||||    
T  44336280 ctgcagttaactgccgaggaaaacctcggtagttaactgccgagaaaa 44336327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 46043473 - 46043524
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaa 88  Q
    |||||||  |||||||| ||||||||| |||||||||||||||| |||||||    
T  46043473 gaaacacgagtaaaataccaaaatatctcctctgcagttaactaccgaggaa 46043524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 49875381 - 49875334
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaa 115  Q
    ||||||||||||||||||||||||||||  ||| |||| |||||||||    
T  49875381 ctgcagttaactatcgaggaaaacttcggcagtaaactaccgagaaaa 49875334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 3939985 - 3940039
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||||||||| || |||  ||||||||| ||||||||||||||| ||||||||||    
T  3939985 ctgcagttaattaccgataaaaacttcggtagttaactgccgaggaaacttcaaa 3940039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 7820158 - 7820212
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||||||||||||||||  |||||||||  |||||||||||||| |||| |||||    
T  7820158 ctgcagttaactatcgaaaaaaacttcggcagttaactgccgaggaaacctcaaa 7820212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 13761086 - 13761044
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccga 110  Q
    ||||||||||||  ||||||||||||||| |||||||||||||    
T  13761086 ctgcagttaactgccgaggaaaacttcgacagttaactgccga 13761044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 48751452 - 48751398
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||||||||| |  |||||||||| ||| ||||||||||||||| ||||||||||    
T  48751452 ctgcagttaattgccgaggaaaacctcggtagttaactgccgaggaaacttcaaa 48751398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 1167529 - 1167582
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaaaa 90  Q
    |||||||  |||||||| ||||||| |||||||||||||||||  |||||||||    
T  1167529 gaaacacaagtaaaataccaaaataccccctctgcagttaactgccgaggaaaa 1167582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 18609935 - 18609894
Alignment:
Q  70 gcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||| ||||||||||||||  ||||||||||||||    
T  18609935 gcagttaactaccgaggaaaacttcggcagttaactgccgag 18609894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 20353975 - 20353934
Alignment:
Q  70 gcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||  |||||||||||||| |||||||||||||||    
T  20353975 gcagttaactgccgaggaaaacttcggtagttaactgccgag 20353934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 22524159 - 22524204
Alignment:
Q  70 gcagttaactatcgaggaaaacttcgatagttaactgccgagaaaa 115  Q
    ||||||||||  |||||||||| ||| |||||||||||||||||||    
T  22524159 gcagttaactcccgaggaaaacctcggtagttaactgccgagaaaa 22524204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 36072400 - 36072449
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaact 117  Q
    ||||||||||||  |||||||||| ||| |||||||||||||| ||||||    
T  36072400 ctgcagttaactgccgaggaaaacctcggtagttaactgccgaaaaaact 36072449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 40056785 - 40056822
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaact 105  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  40056785 ctgcagttaactgtcgaggaaaatttcgatagttaact 40056822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 49502864 - 49502811
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccga-gaaaacttca 120  Q
    ||||||||||||| ||||||||||||||  |||||||| |||| ||||||||||    
T  49502864 ctgcagttaactaccgaggaaaacttcggcagttaactaccgaggaaaacttca 49502811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 15695831 - 15695871
Alignment:
Q  74 ttaactatcgaggaaaacttcgatagttaactgccgagaaa 114  Q
    |||||| |||||||||||||||  |||||||||||||||||    
T  15695831 ttaactgtcgaggaaaacttcggcagttaactgccgagaaa 15695871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 111
Target Start/End: Complemental strand, 45977699 - 45977671
Alignment:
Q  83 gaggaaaacttcgatagttaactgccgag 111  Q
    |||||||||||||||||||||||||||||    
T  45977699 gaggaaaacttcgatagttaactgccgag 45977671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 8264044 - 8264129
Alignment:
Q  295 ggctatgatgaatcatagagatagtcatgcaccactctgat-ttcatgtgctgataactttctcatacccattatttttctgagcc 379  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||||||||||||||||||||||    
T  8264044 ggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatttttctgagcc 8264129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 8277462 - 8277547
Alignment:
Q  295 ggctatgatgaatcatagagatagtcatgcaccactctgat-ttcatgtgctgataactttctcatacccattatttttctgagcc 379  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||||||||||||||||||||||    
T  8277462 ggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatttttctgagcc 8277547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 17342173 - 17342227
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  17342173 ctgcagttaactaccgagaaaaacttcggtagttaactgccgagaaaacttcaaa 17342227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 17343508 - 17343457
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaa 88  Q
    |||||||| |||||||||||||||||||| ||||||||||||| ||||||||    
T  17343508 gaaacactagtaaaatatcaaaatatcccatctgcagttaactgtcgaggaa 17343457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 9473703 - 9473649
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||| ||||||||| |||| |||||||||||| || ||||||||||    
T  9473703 ctgcagttaactaccgaggaaaatttcggtagttaactgccaaggaaacttcaaa 9473649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 45971801 - 45971759
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccga 110  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  45971801 ctgcagttaactatcgaagaaaacttcggtagttaactgccga 45971759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 17343443 - 17343390
Alignment:
Q  69 tgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||| || ||| |||||||||  ||||||||||||||||||||||||||    
T  17343443 tgcagttaattaccgaagaaaacttctgtagttaactgccgagaaaacttcaaa 17343390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 34503740 - 34503789
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaact 117  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||| |||||    
T  34503740 ctgcagttaactaccgagaaaaacttcggtagttaactgccgaggaaact 34503789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 9473767 - 9473716
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaa 88  Q
    |||||||| |||||||||||||||| | ||||||||||||| | ||||||||    
T  9473767 gaaacactggtaaaatatcaaaataccacctctgcagttaattgtcgaggaa 9473716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 11565897 - 11565940
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||    
T  11565897 ctgcagttaactgtcgaggaaaacttcgacagttaactgtcgag 11565940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 16984203 - 16984160
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||  |||||||||| |||||||||||||||||||    
T  16984203 ctgcagttaactgccgaggaaaacctcgatagttaactgccgag 16984160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 36480582 - 36480539
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||| |||||||||||||| ||||||||| |||||    
T  36480582 ctgcagttaactaccgaggaaaacttcggtagttaactaccgag 36480539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 37022103 - 37022056
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaa 115  Q
    ||||||||||||| |||||||||| |||  ||||||||||||||||||    
T  37022103 ctgcagttaactaccgaggaaaacctcggcagttaactgccgagaaaa 37022056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 9472889 - 9472943
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||| |||||||| ||||| || ||||||| |||| ||||||||||    
T  9472889 ctgcagttaactaccgaggaaatcttcggtaattaactgtcgaggaaacttcaaa 9472943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 67601 - 67666
Alignment:
Q  46 gtaaaatatcaaaatatcccctctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||  |||||  ||||||  ||||||||| ||||||||||| ||| |||||||||||||||    
T  67601 gtaaaatacgaaaatgccccctcgacagttaactgtcgaggaaaacctcggtagttaactgccgag 67666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 37015924 - 37015969
Alignment:
Q  63 cccctctgcagttaactatcgaggaaaacttcgatagttaactgcc 108  Q
    |||||| ||||||||||  |||||||||||||| ||||||||||||    
T  37015924 cccctcggcagttaactgccgaggaaaacttcggtagttaactgcc 37015969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 38368259 - 38368308
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaact 117  Q
    ||||||||||||  |||||||||||||| |||| |||| |||||||||||    
T  38368259 ctgcagttaactgccgaggaaaacttcggtagtaaactaccgagaaaact 38368308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 32537594 - 32537630
Alignment:
Q  86 gaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||||||||||||||||||||||||| |||| |||||    
T  32537594 gaaaacttcgatagttaactgccgaggaaacctcaaa 32537630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 48256610 - 48256566
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgaga 112  Q
    ||||||||||||  |||||||||||||  ||||||||||||||||    
T  48256610 ctgcagttaactgccgaggaaaacttcagtagttaactgccgaga 48256566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 33032851 - 33032936
Alignment:
Q  295 ggctatgatgaatcatagagatagtcatgcaccactctgat-ttcatgtgctgataactttctcatacccattatttttctgagcc 379  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||   |||||||||| ||||||||||||||||||||||||||||    
T  33032851 ggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgataattttctcatacccattatttttctgagcc 33032936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 33051093 - 33051178
Alignment:
Q  295 ggctatgatgaatcatagagatagtcatgcaccactctga--tttcatgtgctgataactttctcatacccattatttttctgagcc 379  Q
    |||| |||||| |||||||||||||||||||||||||| |  |||||  ||||||||| ||||||||||||| ||||||||||||||    
T  33051093 ggctgtgatgagtcatagagatagtcatgcaccactctcatgtttca-atgctgataattttctcatacccaatatttttctgagcc 33051178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 9048106 - 9048160
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  9048106 ctgcagttaactaccgaggaaaacttcggtagttaactgccgaggaaacttcaaa 9048160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 32223555 - 32223501
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||||||||| | |||||||||||||| ||||||||||||||| ||||||||||    
T  32223555 ctgcagttaaccaccgaggaaaacttcggtagttaactgccgaggaaacttcaaa 32223501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 9049126 - 9049083
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||| |||||||||||||| |||||||||||||||    
T  9049126 ctgcagttaactaccgaggaaaacttcggtagttaactgccgag 9049083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 11157771 - 11157810
Alignment:
Q  72 agttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  11157771 agttaactgtcgaggaaaacttcgatagttaactgccgag 11157810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 17596908 - 17596961
Alignment:
Q  37 gaaacactcgtaaaatatcaaaatatcccctctgcagttaactatcgaggaaaa 90  Q
    |||||||  |||||||| ||||||| ||||||||||||||||| ||||||||||    
T  17596908 gaaacaccagtaaaataccaaaataccccctctgcagttaactgtcgaggaaaa 17596961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 8193251 - 8193208
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||    
T  8193251 ctgcagttaactgccgaggaaaacttcgacagttaactgccgag 8193208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 11840292 - 11840249
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    |||||||||||| ||||||||||| ||| |||||||||||||||    
T  11840292 ctgcagttaactgtcgaggaaaacctcggtagttaactgccgag 11840249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 13388750 - 13388707
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    |||||||||||| ||||||||||| ||| |||||||||||||||    
T  13388750 ctgcagttaactgtcgaggaaaacctcggtagttaactgccgag 13388707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 31146404 - 31146447
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    |||||||||||| ||||||||||| ||| |||||||||||||||    
T  31146404 ctgcagttaactgtcgaggaaaacatcggtagttaactgccgag 31146447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 19757303 - 19757345
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccga 110  Q
    |||||||||||||||||| ||||||||| ||||||||| ||||    
T  19757303 ctgcagttaactatcgagaaaaacttcggtagttaactaccga 19757345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 32222560 - 32222614
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||||||||||||  ||||||||||||| ||||||||  ||||| ||||||||||    
T  32222560 ctgcagttaactactgaggaaaacttcggtagttaacaaccgaggaaacttcaaa 32222614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 35241889 - 35241931
Alignment:
Q  46 gtaaaatatcaaaatatcccctctgcagttaactatcgaggaa 88  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||    
T  35241889 gtaaaataccaaaataccccctctgcagttaactgtcgaggaa 35241931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 3380803 - 3380848
Alignment:
Q  70 gcagttaactatcgaggaaaacttcgatagttaactgccgagaaaa 115  Q
    ||||||||||| |||||||||| |||| |||||||| |||||||||    
T  3380803 gcagttaactaccgaggaaaacctcgacagttaactaccgagaaaa 3380848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 32643563 - 32643523
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgcc 108  Q
    |||||||||||| ||||||||||| ||| ||||||||||||    
T  32643563 ctgcagttaactgtcgaggaaaacctcggtagttaactgcc 32643523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 35241953 - 35241993
Alignment:
Q  82 cgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||||||||||||| ||||||||||| ||| ||||||||||    
T  35241953 cgaggaaaacttcggtagttaactgcggaggaaacttcaaa 35241993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 5302 - 5345
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    ||||||||||||| |||||||||| ||| |||||||||||||||    
T  5302 ctgcagttaactaccgaggaaaacctcggtagttaactgccgag 5345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 65349 - 65392
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgag 111  Q
    |||||||||||| |||||||||||||||  ||||||||||||||    
T  65349 ctgcagttaactgtcgaggaaaacttcggcagttaactgccgag 65392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 68409 - 68456
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaa 115  Q
    ||||||||||||| |||||||||||||| |||| |||| |||||||||    
T  68409 ctgcagttaactaccgaggaaaacttcggtagtaaactaccgagaaaa 68456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1500 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1500
Description:

Target: scaffold1500; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 801 - 747
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    |||| |||||||| | |||||||||||| ||||||||||||||| |||| |||||    
T  801 ctgctgttaactacctaggaaaacttcggtagttaactgccgaggaaacgtcaaa 747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 232874 - 232820
Alignment:
Q  68 ctgcagttaactatcgaggaaaacttcgatagttaactgccgagaaaacttcaaa 122  Q
    ||||| ||||||  |||||||||| ||| ||||||||||||||| ||||||||||    
T  232874 ctgcaattaactgccgaggaaaacctcggtagttaactgccgaggaaacttcaaa 232820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University