View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15872_low_5 (Length: 432)
Name: NF15872_low_5
Description: NF15872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15872_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 52001758 - 52002003
Alignment:
| Q |
10 |
acatcatcatctttttctttattctctgaaacactatgaatgcgtgacgcaaatctctttgcagtgtctttgttaaatagcttgtactgacttctaataa |
109 |
Q |
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| T |
52001758 |
acatcatcatctttttctttattctctgaaacactatgaatgcgtgacgcaaatctctttgcagtgtctttgttaaatagcttgtactgacttctaataa |
52001857 |
T |
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| Q |
110 |
atgactcgttcctacaaatctcaaaatcatcatcgttgtcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaagg |
209 |
Q |
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| T |
52001858 |
atgactcgttcctacaaatctcaaaatcatcatcgttgtcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaagg |
52001957 |
T |
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| Q |
210 |
tatttgattttctggtatttccttcctctgatgatgatcatcaatg |
255 |
Q |
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| T |
52001958 |
tagttgattttctggtatttccttcctctgatgatgatcatcaatg |
52002003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 287 - 413
Target Start/End: Original strand, 52002002 - 52002128
Alignment:
| Q |
287 |
tgagtggtttctttccttttggatcggaagtgttttcaaagttgtagagttttgtgcgtttagaagaagaggcatcatcggagtcgggttcagttcctct |
386 |
Q |
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| T |
52002002 |
tgagtggtttctttccttttggatcagaagtgttttcaaagttgtagagttttgtgcgtttagaagaagaggcatcatcggagtcgggttccgttcctct |
52002101 |
T |
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| Q |
387 |
cttgagaaagggttcatgtggtctttc |
413 |
Q |
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| T |
52002102 |
cttgagaaagggttcatgtggtctttc |
52002128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 52011785 - 52011878
Alignment:
| Q |
148 |
tcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaaggtatttgattttctggtatttccttcctctgat |
241 |
Q |
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| T |
52011785 |
tcgctatcattagtttcagtttcattggtaatgatatagtcattaatatccaaatccagtgatatttgattttctgttatttccttcctctgat |
52011878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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