View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15872_low_6 (Length: 428)
Name: NF15872_low_6
Description: NF15872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15872_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 420
Target Start/End: Original strand, 35072998 - 35073402
Alignment:
| Q |
10 |
ccaagctagtagcacttccctcatatcatatccatggtccatccaaattttattttctctaaaatttaatcaaccgttctagatgtagttctagtttcta |
109 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35072998 |
ccaagctagtagcacttccctcat-----atccatggtccatccaaattttattttctctaaaatttaatcaaccgttctagatgtagttcttgtttcta |
35073092 |
T |
|
| Q |
110 |
gaaacaaaaataggtaatgactgcataacaacctacaagcgtacacgtgtcatatagaactaaaaccttgtttgatctccacgtgtcaatatcataacac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
35073093 |
gaaacaaaaataggtaatgactgcataacaacctacaagcgtacacgtgtcatatagaa-ttaaaccttgtttgatctccacgtgtcaatatcataacac |
35073191 |
T |
|
| Q |
210 |
gtgatacgtgttaacgaagcaagcatgaaaataaacattcataatttcacacaccacctnnnnnnnnnnnnnnntaaccttttttctaatctcttctgtt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
35073192 |
gtgatacgtgttaacgaagcaagcatgaaaataaacattcataatttcatacaccacctacaaaaaaataaaaataaccttttttctaatctcttctgtt |
35073291 |
T |
|
| Q |
310 |
tagatttgagtttgagcgccgaaggagacgatttatttaagctcacacacaccaaacttcaccaagataagtatattaccttacccaattggttactgtt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35073292 |
tagatttgagtttgagcgccgaaggagacgatttatttaagctcacacacaccaaacttcaccaagataagtatattaccttaccgaattggttactgtt |
35073391 |
T |
|
| Q |
410 |
tcatctctctc |
420 |
Q |
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|||| |||||| |
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| T |
35073392 |
tcatttctctc |
35073402 |
T |
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