View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15873_high_10 (Length: 435)

Name: NF15873_high_10
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15873_high_10
NF15873_high_10
[»] chr4 (21 HSPs)
chr4 (18-432)||(53995548-53995962)
chr4 (27-331)||(1458280-1458585)
chr4 (20-304)||(43137979-43138265)
chr4 (21-331)||(7290655-7290963)
chr4 (18-308)||(34458061-34458358)
chr4 (103-331)||(23601912-23602138)
chr4 (51-332)||(47304970-47305246)
chr4 (20-309)||(47682047-47682338)
chr4 (18-286)||(36444942-36445207)
chr4 (18-278)||(31763736-31763997)
chr4 (18-329)||(50689203-50689511)
chr4 (197-308)||(47764664-47764774)
chr4 (197-331)||(51084188-51084322)
chr4 (25-164)||(19902264-19902403)
chr4 (195-308)||(52255691-52255804)
chr4 (196-330)||(1180567-1180704)
chr4 (166-331)||(33881226-33881391)
chr4 (157-239)||(40712010-40712092)
chr4 (250-295)||(19902401-19902446)
chr4 (268-300)||(5382653-5382685)
chr4 (264-328)||(54234108-54234171)
[»] chr5 (13 HSPs)
chr5 (18-331)||(31335254-31335568)
chr5 (18-331)||(10541434-10541745)
chr5 (18-331)||(31302939-31303253)
chr5 (18-331)||(40897345-40897637)
chr5 (18-327)||(31223588-31223898)
chr5 (18-308)||(12621252-12621542)
chr5 (18-216)||(34583272-34583469)
chr5 (197-327)||(34583477-34583607)
chr5 (21-164)||(5926735-5926878)
chr5 (194-303)||(5926626-5926735)
chr5 (20-97)||(28376503-28376580)
chr5 (166-326)||(28283195-28283355)
chr5 (202-300)||(5863390-5863488)
[»] chr1 (13 HSPs)
chr1 (51-331)||(40708151-40708431)
chr1 (20-332)||(35361806-35362118)
chr1 (39-331)||(3289014-3289306)
chr1 (18-327)||(13640714-13641023)
chr1 (65-327)||(13260329-13260592)
chr1 (20-195)||(51126676-51126849)
chr1 (39-303)||(9856728-9856993)
chr1 (159-331)||(12569684-12569856)
chr1 (197-332)||(13142341-13142476)
chr1 (166-309)||(22680645-22680788)
chr1 (210-306)||(49831758-49831853)
chr1 (199-313)||(2753458-2753572)
chr1 (198-300)||(43403407-43403509)
[»] chr7 (13 HSPs)
chr7 (21-327)||(9458610-9458917)
chr7 (18-331)||(5734204-5734519)
chr7 (125-331)||(4920142-4920348)
chr7 (18-300)||(26425126-26425408)
chr7 (18-331)||(3525934-3526247)
chr7 (18-246)||(21523678-21523906)
chr7 (45-328)||(27157523-27157804)
chr7 (51-183)||(12217984-12218117)
chr7 (215-331)||(21857756-21857872)
chr7 (251-310)||(5515681-5515740)
chr7 (196-242)||(9822404-9822450)
chr7 (196-242)||(10724329-10724375)
chr7 (287-328)||(12217849-12217890)
[»] chr8 (14 HSPs)
chr8 (18-331)||(29442428-29442740)
chr8 (18-331)||(27209026-27209337)
chr8 (20-312)||(6635600-6635892)
chr8 (20-312)||(6627801-6628093)
chr8 (20-277)||(8109213-8109468)
chr8 (18-327)||(29909761-29910070)
chr8 (18-323)||(5938281-5938579)
chr8 (197-331)||(14266437-14266571)
chr8 (198-336)||(42279809-42279946)
chr8 (179-297)||(10582954-10583072)
chr8 (168-241)||(13582256-13582329)
chr8 (18-59)||(14858152-14858193)
chr8 (20-87)||(18421563-18421628)
chr8 (196-240)||(25887748-25887792)
[»] chr2 (28 HSPs)
chr2 (18-331)||(41534753-41535059)
chr2 (18-301)||(40355915-40356196)
chr2 (39-331)||(38855478-38855769)
chr2 (19-325)||(5305397-5305704)
chr2 (24-304)||(12068500-12068779)
chr2 (39-331)||(30487607-30487896)
chr2 (18-280)||(15440526-15440786)
chr2 (128-332)||(34639721-34639923)
chr2 (125-328)||(38119469-38119672)
chr2 (71-331)||(42472395-42472650)
chr2 (166-331)||(19089850-19090004)
chr2 (252-316)||(30617089-30617153)
chr2 (159-240)||(45571235-45571316)
chr2 (159-240)||(45574902-45574983)
chr2 (159-240)||(45578569-45578650)
chr2 (159-240)||(45582236-45582317)
chr2 (159-240)||(45585903-45585984)
chr2 (159-240)||(45589570-45589651)
chr2 (159-240)||(45593237-45593318)
chr2 (159-240)||(45596904-45596985)
chr2 (159-240)||(45600571-45600652)
chr2 (159-240)||(45604238-45604319)
chr2 (159-240)||(45607905-45607986)
chr2 (159-240)||(45611572-45611653)
chr2 (159-240)||(45615239-45615320)
chr2 (255-328)||(19284807-19284880)
chr2 (252-331)||(32980326-32980406)
chr2 (20-61)||(34639974-34640015)
[»] chr6 (12 HSPs)
chr6 (39-332)||(16166566-16166859)
chr6 (18-331)||(692800-693111)
chr6 (18-331)||(22293257-22293570)
chr6 (18-327)||(22300253-22300562)
chr6 (134-332)||(4127218-4127415)
chr6 (18-195)||(15055375-15055552)
chr6 (135-272)||(16464069-16464206)
chr6 (208-328)||(6139120-6139240)
chr6 (176-299)||(17313890-17314013)
chr6 (18-183)||(6138963-6139117)
chr6 (252-327)||(29426727-29426802)
chr6 (24-73)||(16463994-16464043)
[»] chr3 (9 HSPs)
chr3 (39-328)||(53200267-53200555)
chr3 (20-331)||(54739629-54739940)
chr3 (18-332)||(9797931-9798220)
chr3 (24-304)||(44027771-44028047)
chr3 (197-312)||(1070969-1071084)
chr3 (195-331)||(4958007-4958143)
chr3 (169-237)||(43106278-43106347)
chr3 (197-309)||(50385564-50385667)
chr3 (166-316)||(50496168-50496319)
[»] scaffold0004 (1 HSPs)
scaffold0004 (197-309)||(33727-33839)


Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 53995548 - 53995962
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53995548 tctatccatctataaattttacaattgtttgtcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 53995647  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| |||    
T  53995648 aaaaaatttgatgaacaaactatgtttgaaatttgtaacataaactaagcttttagacagactaataggtcaggtcagacttttaaaaaggtcaggtcag 53995747  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggct 317  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  53995748 gcttaaaataaagcctttgacaagtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggcttggcctggct 53995847  T
Q  318 cattcccacccctagccgctatagatattgtttcttcatcttcgctatccactgaaatcgaattgtcctcacaatatgatcggcttaaaagatgtattat 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  53995848 cattcccacccctagccgctatagatattgtttcttcatcttcgctatccactggaatcgaattgtcctcacaatatgatcggcttaaaagatgtattat 53995947  T
Q  418 atattcttcgacatc 432  Q
    |||||||||||||||    
T  53995948 atattcttcgacatc 53995962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 27 - 331
Target Start/End: Complemental strand, 1458585 - 1458280
Alignment:
Q  27 ctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaacaat-t 125  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||| ||||||||||||| ||     | |    
T  1458585 ctatatattttacaattgtgtttcattagtttaatctgtatctaattaatgtttatctctatattaagtatgttgcacaaattgaaagg-gattttttat 1458487  T
Q  126 tgatgaacaaactctgtttgaaattt-gtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaa 224  Q
    | ||||||| |||||||||||||||| | | ||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  1458486 ttatgaacatactctgtttgaaattttgcatcataaactaggcttttagacagactaataggtcagaccagacttttaaaaaggtcaggtcaggcttaaa 1458387  T
Q  225 ataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattccc 324  Q
    ||||| |||||||||||||||||||| || |||||||||||||||||||||| || |||| |||||||||||||||||||||||| || |||||||||||    
T  1458386 ataaaatctttgacaggtaaaaggccaagacttaggccttagttttttcaacaagacctaacctatttaagcaaagcccggctcgccccggctcattccc 1458287  T
Q  325 accccta 331  Q
    |||||||    
T  1458286 accccta 1458280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 43137979 - 43138265
Alignment:
Q  20 tatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctct--atatttagtacattgtacaaattgaaaggag 117  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||  ||||| ||||  ||| ||||||||||||       
T  43137979 tatccatctataaattttacaattgtgtttcattagtttaatatgtatctaattaatgtttatctctctatattaagtatgttgcacaaattgaaagtga 43138078  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    ||| || ||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||| |||||||||||||||||||||||||    
T  43138079 aaaaaaattgatgaactaactctgtttgaaatttgtaacacaaactaggcttttaaacaggctaattggtcagaccagacttttaaaaaggtcaggccag 43138178  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccg 304  Q
     |||||||||||||||||||| | ||||||||| |||||||||||| | |||||||||||||||| | |||| |||| |||||||||    
T  43138179 acttaaaataaagtctttgactgataaaaggccaaggcttaggcctcaattttttcaactaggccaaacctacttaaacaaagcccg 43138265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 7290963 - 7290655
Alignment:
Q  21 atccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaa 120  Q
    ||||||||||||||||||||||||||||| ||||||| | | | ||||||||||||||||||||||||||| |||   ||| |||||||||||||| |||    
T  7290963 atccatctataaattttacaattgtgttttattagtt-attttgtatctaattaatgtttatctctatattaagtgtgttgcacaaattgaaaggacaaa 7290865  T
Q  121 caatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggct 220  Q
     |||| || ||||| ||| |||||||||||||||||| |||||| |||||||| ||||||||| ||||||  ||||||||||||||||||||| ||||||    
T  7290864 aaatt-gaagaacatactatgtttgaaatttgtaacacaaactaggcttttaggcaggctaataggtcaggccagacttttaaaaaggtcaggtcaggct 7290766  T
Q  221 taaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcat 320  Q
    |||||||||||||||||||| |||||| || |||||||||| ||||||||||||||||  |||||||||||||| ||||| |||||||||||  ||||||    
T  7290765 taaaataaagtctttgacagataaaagaccaaggcttaggctttagttttttcaactaaacctagcctatttaaccaaagtccggctcggcccagctcat 7290666  T
Q  321 tcccaccccta 331  Q
    || ||||||||    
T  7290665 tctcaccccta 7290655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 34458358 - 34458061
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtt------tatctctatatttagtacattgtacaaattga 111  Q
    |||||||||||||||||||||||| | ||||||||||||||||| | |||||||||||||||      ||||| |||||| ||||  ||| |||||||||    
T  34458358 tctatccatctataaattttacaactatgtttcattagtttaatttgtatctaattaatgttaatgtttatctttatattaagtatgttgcacaaattga 34458259  T
Q  112 aaggagaaacaat-ttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtc 210  Q
    ||||| ||||||  |||||||||| | ||| ||||||||| ||||| ||||||| |||||||||||||||||| || |||  |||||||||||||||||     
T  34458258 aaggaaaaacaaaattgatgaacatattctttttgaaattcgtaacgtaaactaggcttttagacaggctaataggacaggccagacttttaaaaaggtt 34458159  T
Q  211 aggccaggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctc 308  Q
    ||||||  |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  34458158 aggccaaacttaaaataaagtctttgactggtaaaaggccaaggcttaggtcttagttttttcaactatgcctagcctatttaagcaaagtccggctc 34458061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 103 - 331
Target Start/End: Complemental strand, 23602138 - 23601912
Alignment:
Q  103 acaaattgaaaggagaaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagactttta 202  Q
    |||||||||||||| ||| |  | |||||||| | |||||||||||||||||||| |||||| ||||||||||| |||||| ||||||  ||| ||||||    
T  23602138 acaaattgaaaggaaaaaaa--tcgatgaacatattctgtttgaaatttgtaacacaaactaggcttttagacaagctaataggtcaggccaggctttta 23602041  T
Q  203 aaaaggtcaggccaggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcc 302  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23602040 aaaaggtcaggccagacttaaaataaagcctttgacaggtaaaaggtcaaggcttaggccttagttttttcaactaggtctagcctatttaagcaaagcc 23601941  T
Q  303 cggctcggcctggctcattcccaccccta 331  Q
    || ||||||| ||||||||||||||||||    
T  23601940 cgactcggccaggctcattcccaccccta 23601912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 51 - 332
Target Start/End: Original strand, 47304970 - 47305246
Alignment:
Q  51 attagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaacaatttgatgaacaaactctgtttgaaatt 150  Q
    ||||||||||| | || |||||||||||||||||||||||| ||||| ||| | |||||||||| | ||| |  || ||||||||||||||||  |||||    
T  47304970 attagtttaatttgtacctaattaatgtttatctctatattaagtacgttgcataaattgaaagaaaaaaaa--ttaatgaacaaactctgttaaaaatt 47305067  T
Q  151 tgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaaaaggcc 250  Q
    |||||||||||||| ||||||||||| |||||| || ||| ||||||||||||||||||||||  |||||||||||||||||||||| |||||||||| |    
T  47305068 tgtaacataaactaggcttttagacaagctaataggccaggtcagacttttaaaaaggtcaggttaggcttaaaataaagtctttgataggtaaaaggtc 47305167  T
Q  251 taggcttaggccttag-ttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccacccctag 332  Q
     | |||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||    |||||||||||||||||    
T  47305168 aatgcttaggctttagtttttttcaactaggcctagcctatttaatcaaagtccggctcggc----ctcattcccacccctag 47305246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 47682047 - 47682338
Alignment:
Q  20 tatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtaca--ttgtacaaattgaaaggag 117  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| |  ||| | ||||||||||||     
T  47682047 tatccatctataaattttacaattgtgtttcattagtttaatttgtatctaattaatgtttatctctatattaagtatacgttgcataaattgaaaggaa 47682146  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    ||| | |  |||||||  | ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||||| ||||||||    
T  47682147 aaaaact--gatgaaccgattctgtttgaaatttgtaacataaactaggcttttagacagactaataggtcagaccagacttttaaaaaggccaggccag 47682244  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggc---ttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcg 309  Q
     |||||||||||   |||||||||||||||| | || |   ||| ||||| |||||||| ||||||||||| ||||||||||||| |||||||||    
T  47682245 acttaaaataaaacatttgacaggtaaaaggtcaagacttattatgccttggttttttctactaggcctagtctatttaagcaaa-cccggctcg 47682338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 36444942 - 36445207
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||| |||||||| ||||| ||| ||||||||||||       
T  36444942 tctatccatctataaattttacacttgtgttttattagtttaatttgtatctaattaatgtttatatctatattaagtacgttgcacaaattgaaag--- 36445038  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    ||| || |||||||||| | ||| ||| |||||||||||| |||||| ||||||  ||||| |||| |||||||| || |||||||||||| ||| ||||    
T  36445039 aaaaaaattgatgaacagattctctttaaaatttgtaacacaaactaggcttttgaacaggttaataggtcagattaggcttttaaaaaggccagaccag 36445138  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagc 286  Q
     ||||||||||||||||||||| ||||||| |  | ||||| |||||||||||||||||||| ||||||    
T  36445139 acttaaaataaagtctttgacatgtaaaagactaaagcttacgccttagttttttcaactagacctagc 36445207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 31763736 - 31763997
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaa-gga 116  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||| ||| ||||| ||| ||||||||||| |||    
T  31763736 tctatccatctataaattttacgattgtgttttattagtttaatgtgtatctaattaatgtttatctctacattaagtacgttgcacaaattgaaaagga 31763835  T
Q  117 gaaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggcca 216  Q
     | | || ||||||||   || ||| ||||||||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||| || ||| ||    
T  31763836 aagaaaaattgatgaatggacactgcttgaaatttgtaacacaaactaagcttttagacaggctagtaggtcagattagacttttaaaaatgttaggtca 31763935  T
Q  217 ggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaacta 278  Q
      |||||||||||||||||||  | |||||||   |||||||||||||||||||||||||||    
T  31763936 cacttaaaataaagtctttgatggataaaaggttaaggcttaggccttagttttttcaacta 31763997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 50689511 - 50689203
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctata--tttagtacattgtacaaattgaaagg 115  Q
    ||||||||||| |||||||||| | ||||||| ||||||||||| | |||||||||| ||||||||||| ||  || |||   ||| ||||||||||| |    
T  50689511 tctatccatctgtaaattttacgactgtgttttattagtttaatatgtatctaattattgtttatctctctacattaagtgtgttgcacaaattgaaaag 50689412  T
Q  116 agaaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggcc 215  Q
    | | | || | |||||   |||||| |||||||||||||||| |||||| |||||||||||||||||| |||||| |||| ||||| ||||||     ||    
T  50689411 aaagaaaaatggatgactgaactctatttgaaatttgtaacacaaactaggcttttagacaggctaataggtcaggtcaggcttttgaaaagg-----cc 50689317  T
Q  216 aggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctgg 315  Q
    || || |||||||||| ||||||| ||||||| || ||||||| ||||||||||||||||||||| |   ||||||||||||||| |||| |||| | ||    
T  50689316 agactcaaaataaagtgtttgacaagtaaaagaccaaggcttaagccttagttttttcaactaggtcagacctatttaagcaaagtccggttcggtccgg 50689217  T
Q  316 ctcattcccacccc 329  Q
     |||||||||||||    
T  50689216 atcattcccacccc 50689203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 308
Target Start/End: Original strand, 47764664 - 47764774
Alignment:
Q  197 cttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagc 296  Q
    ||||||||||||||||| ||| |||||||||||| |||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  47764664 cttttaaaaaggtcaggtcagacttaaaataaagcctttaaaaggtaaaaggccaaggct-aggccttagttttttcaactaggcctagcctatttaagc 47764762  T
Q  297 aaagcccggctc 308  Q
    ||||||||||||    
T  47764763 aaagcccggctc 47764774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 51084322 - 51084188
Alignment:
Q  197 cttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagc 296  Q
    ||||||||||||  |||||||||||||||||||| |||||||| |  ||  ||| |||||||||| ||||||||||||||||||||  ||||||||||||    
T  51084322 cttttaaaaaggctaggccaggcttaaaataaagcctttgacatgctaatagcccaggcttaggctttagttttttcaactaggcccggcctatttaagc 51084223  T
Q  297 aaagcccggctcggcctggctcattcccaccccta 331  Q
    ||||| |||||||||| ||||||||||||||||||    
T  51084222 aaagctcggctcggcccggctcattcccaccccta 51084188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 19902264 - 19902403
Alignment:
Q  25 atctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaacaat 124  Q
    ||||||||||||||||||| ||||| |||| |||||| | |||||||||||||||||||| |||||| ||||  ||| | ||||||||| || | | ||     
T  19902264 atctataaattttacaattatgttttattaatttaatttatatctaattaatgtttatctatatattaagtatgttgcataaattgaaaagaaagataaa 19902363  T
Q  125 ttgatgaacaaactctgtttgaaatttgtaacataaacta 164  Q
    |||||||||| ||| | ||| |||||||||||| ||||||    
T  19902364 ttgatgaacatactatatttaaaatttgtaacacaaacta 19902403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 308
Target Start/End: Original strand, 52255691 - 52255804
Alignment:
Q  195 gacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag-gtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctattta 293  Q
    ||||||||||||||||| ||||  |||||||||||| |||||||||  ||| ||||| || |||| || ||||||||||||||||| |  ||||||||||    
T  52255691 gacttttaaaaaggtcaagccaaacttaaaataaagcctttgacagactaataggcc-agacttaagctttagttttttcaactagcctcagcctattta 52255789  T
Q  294 agcaaagcccggctc 308  Q
    | ||||| |||||||    
T  52255790 aacaaagtccggctc 52255804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 330
Target Start/End: Original strand, 1180567 - 1180704
Alignment:
Q  196 acttttaaaaaggtcaggccaggcttaaaataaagtctttgacagg-taaaaggcctaggc---ttaggccttagttttttcaactaggcctagcctatt 291  Q
    |||||||||||||||||| ||| |||||||||||| |||||||||| ||| ||||| ||||   |||| | | |||||||||||||| ||    ||||||    
T  1180567 acttttaaaaaggtcaggtcagacttaaaataaagcctttgacaggctaataggcc-aggcttattagacttcagttttttcaactatgctcgacctatt 1180665  T
Q  292 taagcaaagcccggctcggcctggctcattcccacccct 330  Q
    ||||||||||||  |||  || |||||||||||||||||    
T  1180666 taagcaaagcccaactcaacccggctcattcccacccct 1180704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 331
Target Start/End: Original strand, 33881226 - 33881391
Alignment:
Q  166 gcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacagg-taaaaggcctaggcttaggcctt 264  Q
    |||||||||||| |||||  | ||| || | |||||||||| ||||||  ||  ||||||||||| |||||||||  ||| | ||| || ||||| | ||    
T  33881226 gcttttagacagactaatatgccagttcgggcttttaaaaatgtcaggttagttttaaaataaagcctttgacagactaatatgcc-agacttagccttt 33881324  T
Q  265 agttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccaccccta 331  Q
    |||||||||||||||||||  |||||||||| |||| ||||||| ||| | |  |||||||||||||    
T  33881325 agttttttcaactaggcctgacctatttaaggaaagtccggctcagcccgacctattcccaccccta 33881391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 40712010 - 40712092
Alignment:
Q  157 ataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgaca 239  Q
    ||||| || ||||||| | | |||||| |||||||||||||||||||||||||||| |||   ||||||||||||||| ||||    
T  40712010 ataaattaggcttttacatatgctaataggtcagatcagacttttaaaaaggtcagaccatagttaaaataaagtcttggaca 40712092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 19902401 - 19902446
Alignment:
Q  250 ctaggcttaggccttagttttttcaactaggcctagcctatttaag 295  Q
    |||| ||||||||||||||||||||||||||| ||  |||||||||    
T  19902401 ctagacttaggccttagttttttcaactaggcataatctatttaag 19902446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 5382653 - 5382685
Alignment:
Q  268 tttttcaactaggcctagcctatttaagcaaag 300  Q
    |||||||||||||||| ||||||||||||||||    
T  5382653 tttttcaactaggcctggcctatttaagcaaag 5382685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 328
Target Start/End: Complemental strand, 54234171 - 54234108
Alignment:
Q  264 tagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccaccc 328  Q
    ||||||||||||||||||||  |||||||||||| ||| | |||| ||| |||||||||| ||||    
T  54234171 tagttttttcaactaggcctgacctatttaagcacagctc-gctctgcccggctcattcctaccc 54234108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 31335568 - 31335254
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||| ||| ||||||||||||||     
T  31335568 tctatccatctataaattttataattgtgtttcattagtttaatatgtatctaattaatgtttatatctatattaagtacgttgcacaaattgaaaggaa 31335469  T
Q  118 aaacaat-ttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggcca 216  Q
    ||| ||  |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||| |||    
T  31335468 aaaaaaaattgatgaacatactctgttcgaaatttgtaacataaactaagcttttagacaggctaataggtcaggctagacttttaaaaaggtcagacca 31335369  T
Q  217 ggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggc 316  Q
     ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||  ||    
T  31335368 agcttaaaataaagtctttgacaggtaaaaggccaaagcttaggccttagttttttcaacaaggcctagcctatttaagcaaagcccgactcggcccagc 31335269  T
Q  317 tcattcccaccccta 331  Q
    |||||||||||||||    
T  31335268 tcattcccaccccta 31335254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 10541745 - 10541434
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |||||||| ||||| ||| ||||||||||||  |    
T  10541745 tctatccatctataaattttacaattgtgtttcattagtttaatatgtatctaattaatgttaatttctatattaagtacgttgcacaaattgaaagt-g 10541647  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    ||| |||| |||||||||||||||||||||||||||||||  ||||| |||||||||||||||||| |||||   | |||||||||||||||||||||||    
T  10541646 aaaaaatt-gatgaacaaactctgtttgaaatttgtaacactaactaggcttttagacaggctaataggtcatgcctgacttttaaaaaggtcaggccag 10541548  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggct 317  Q
      ||||||||||| |||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||    
T  10541547 aattaaaataaagcctttgacaagtaaaaggtcaaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagtccggctcggccatgct 10541448  T
Q  318 cattcccaccccta 331  Q
    ||||||||| ||||    
T  10541447 cattcccactccta 10541434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 31303253 - 31302939
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||| ||||||||||||||     
T  31303253 tctatccatctataaatttgataattgtgtttcattagtttaatctgtatctaattaatgtttatctctatattaagtatgttgcacaaattgaaaggaa 31303154  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    ||| |||| |||||||| |||||||| |||||||||||||||||||| | ||||||||||| |||| ||| ||  |||||||||||||||||||| |||     
T  31303153 aaaaaatt-gatgaacatactctgttcgaaatttgtaacataaactaggtttttagacaggttaataggttaggccagacttttaaaaaggtcagaccaa 31303055  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggcct--tagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctgg 315  Q
      ||||||||||| ||||||||| ||||||||| | ||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  31303054 atttaaaataaagcctttgacagataaaaggccaatgcttaggccttatagttttttcaacaaggcctagcctatttaagcaaagcccggctcggcccgg 31302955  T
Q  316 ctcattcccaccccta 331  Q
    ||||||||||||||||    
T  31302954 ctcattcccaccccta 31302939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 40897345 - 40897637
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaagg-a 116  Q
    ||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |    
T  40897345 tctatccgtctataaattttacaattgtgtttcattaacttaatctgtatctaattaatgtttatctctatattaagtacattgcacaaattgaaaggaa 40897444  T
Q  117 gaaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggcca 216  Q
     ||| || |||||||||| |||||||||||||||||||||||||| || |||||||||||| ||||| ||||||| ||||||                      
T  40897445 aaaaaaaattgatgaacatactctgtttgaaatttgtaacataaattaggcttttagacagactaataggtcagaacagact------------------ 40897526  T
Q  217 ggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggc 316  Q
        |||||||||| |||||||||| |||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||    
T  40897527 ----taaaataaagcctttgacaggcaaaaagccaaggcttaggctttagttttttcaacaaggcctagcctatttaagcaaagcccgactcggcccggc 40897622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 31223898 - 31223588
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatct--ctatctaattaatgtttatctctatatttagtacattgtacaaattgaaagg 115  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |  | ||||||||||||||||||| |||||| ||||  ||| ||||||||||||     
T  31223898 tctatccatctataaattttataattgtgtttcattagtataattttgcaatctaattaatgtttatctttatattaagtatgttgcacaaattgaaag- 31223800  T
Q  116 agaaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttt--tagacaggctaatgggtcagatcagacttttaaaaaggtcagg 213  Q
      ||| || |||||||||||||||| ||||||||||||| ||||||||| |||||  ||||||||||||| |||||   ||||||||||||||||||| |    
T  31223799 --aaaaaaattgatgaacaaactctctttgaaatttgtagcataaactaggctttattagacaggctaataggtcatgccagacttttaaaaaggtcatg 31223702  T
Q  214 ccaggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcct 313  Q
    |||    ||||||||||||||||||||||||||| || | |||||| |||||||||||||||  |||||||| ||||||||||||| |||  |||||||     
T  31223701 ccaatactaaaataaagtctttgacaggtaaaagaccaaagcttagaccttagttttttcaatgaggcctagtctatttaagcaaaacccatctcggccc 31223602  T
Q  314 ggctcattcccacc 327  Q
    |||||||| |||||    
T  31223601 ggctcatttccacc 31223588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 12621542 - 12621252
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    |||||||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||| ||||  | | ||||||||||| ||     
T  12621542 tctatccatctataaattttacaattgtattttattagtttaatttgtatctaattaatgtttatctctatattaagtatgtcgcacaaattgaaaagaa 12621443  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    |     ||||||||| | ||| |||||||||||||||| | |||||| ||||||| | || ||||| |||||| ||||||||||||||||| ||  ||||    
T  12621442 attttttttgatgaaaagactgtgtttgaaatttgtaatacaaactaggcttttaaaaagactaataggtcaggtcagacttttaaaaaggccaaaccag 12621343  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctc 308  Q
     |||||||||||| ||||||||||||||||  | |||||||||||||| ||||||||||||  |||||||||||||||||||| |||||||    
T  12621342 acttaaaataaagcctttgacaggtaaaagatcaaggcttaggccttaattttttcaactaaacctagcctatttaagcaaagtccggctc 12621252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 34583272 - 34583469
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||| | |||||||||||| ||||||| |||||| ||||| ||| |||||||||||||||    
T  34583272 tctacccatctatacattttacaattgtgttttattagtttaatttgtatctaattaatatttatctttatattaagtacgttgcacaaattgaaaggag 34583371  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggcca 216  Q
    ||| || |||||||||| ||||| |||||||||||||| | |||||| |||||||||||||||||| || ||   ||| |||||||||||| |||||||    
T  34583372 aaa-aaattgatgaacagactctatttgaaatttgtaagacaaactaggcttttagacaggctaataggccaagccaggcttttaaaaaggccaggcca 34583469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 197 - 327
Target Start/End: Original strand, 34583477 - 34583607
Alignment:
Q  197 cttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagc 296  Q
    |||||||||||| ||||||||||||||||||||| ||  ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||     
T  34583477 cttttaaaaaggccaggccaggcttaaaataaagcctccgacagctaaaaggccaaggcttaggtcttagttttttcaactaggcctagcctatttaagt 34583576  T
Q  297 aaagcccggctcggcctggctcattcccacc 327  Q
    |||||||||||||||| ||||||||||||||    
T  34583577 aaagcccggctcggcccggctcattcccacc 34583607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 5926878 - 5926735
Alignment:
Q  21 atccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaa 120  Q
    ||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||||||||| |||||||||||| ||| ||||||  |||  | |      
T  5926878 atccatctataaattttacaattgttttttattagtttaatttgtatctaattaatgtttatctttatatttagtacgttgcacaaataaaaaataaatg 5926779  T
Q  121 caatttgatgaacaaactctgtttgaaatttgtaacataaacta 164  Q
     || |||||||||| |||||||||||||||||||||| ||||||    
T  5926778 aaaattgatgaacatactctgtttgaaatttgtaacacaaacta 5926735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 303
Target Start/End: Complemental strand, 5926735 - 5926626
Alignment:
Q  194 agacttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctattta 293  Q
    |||||||||| ||||||||||||  ||||||||||||| ||||| || ||||| | | ||||||| | ||||||||||||||||||| ||   ||||| |    
T  5926735 agacttttaataaggtcaggccaaacttaaaataaagtatttgatagataaaaagtcaaggcttatgtcttagttttttcaactaggtctgatctattaa 5926636  T
Q  294 agcaaagccc 303  Q
    ||||||||||    
T  5926635 agcaaagccc 5926626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 28376503 - 28376580
Alignment:
Q  20 tatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtac 97  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||  || |||||||||||||||| |||||| |||||    
T  28376503 tatccatctataaattttacaattatgttttattaatttaatctgcatttaattaatgtttatctatatattaagtac 28376580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 326
Target Start/End: Complemental strand, 28283355 - 28283195
Alignment:
Q  166 gcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggcctta 265  Q
    |||||||||||||||||| || ||  |  |||||||||||| |||||| ||| |||||||||||  ||||||||||| ||  | | || ||||  | |||    
T  28283355 gcttttagacaggctaataggccaagttggacttttaaaaaagtcaggtcagacttaaaataaaacctttgacaggttaatagaccagacttaaacttta 28283256  T
Q  266 gttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccac 326  Q
    | ||||| ||||||||   |||||||||||||||  |||||| | ||  ||||||||||||    
T  28283255 gcttttttaactaggctcggcctatttaagcaaaatccggctggacccagctcattcccac 28283195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 5863390 - 5863488
Alignment:
Q  202 aaaaaggtcaggccaggcttaaaataaagtctttgacagg-taaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaag 300  Q
    ||||||||||  |||  ||||||||||||||||||||| | ||| ||  | || ||||||| ||| |||||||||||||||||  |||||||||||||||    
T  5863390 aaaaaggtcataccaaacttaaaataaagtctttgacaagctaatagatcaag-cttaggctttatttttttcaactaggcctgacctatttaagcaaag 5863488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 51 - 331
Target Start/End: Original strand, 40708151 - 40708431
Alignment:
Q  51 attagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaacaatttgatgaacaaactctgtttgaaatt 150  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||| ||| | |||||||||| | ||| || || ||||||||||||||||| |||||    
T  40708151 attagtttaatttgtatctaattaatgtttatctctatattaagtacgttgcataaattgaaagaaaaaaaaaattaatgaacaaactctgtttaaaatt 40708250  T
Q  151 tgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaaaaggcc 250  Q
    ||||||| |||||| ||||||||||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40708251 tgtaacacaaactacgcttttagacaggttaataggtcaggccagacttttaaaaaggtcaggccaggcttaaaataaagcctttgacaggtaaaaggcc 40708350  T
Q  251 taggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccaccccta 331  Q
     |||||||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||    
T  40708351 aaggcttaggctttagttttttcaactaggcctagcctatttaaccaaagtccgactcggcccggctcattcccaccccta 40708431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 35362118 - 35361806
Alignment:
Q  20 tatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaa 119  Q
    ||||||| |||||||||||| ||||||||| ||||||||||| | ||||||| ||||||||||||||| ||| ||||  ||| ||||||||||| || |     
T  35362118 tatccatatataaattttacgattgtgttttattagtttaatgtgtatctaactaatgtttatctctacattaagtatgttgcacaaattgaaaagaaag 35362019  T
Q  120 acaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggc 219  Q
    | || | ||||||   |||||||| ||||||||||||| |||||| | |||||||||||||||| |  |||| |||||||||||||||| ||| |||  |    
T  35362018 aaaaatggatgaatcgactctgttagaaatttgtaacacaaactagggttttagacaggctaatagaccagaccagacttttaaaaaggccagaccatac 35361919  T
Q  220 ttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctca 319  Q
    |||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |||||| ||||||| |||||||||| |||||||||| ||||||    
T  35361918 ttaaaataaagtctttgacatgtaaaaggtcaaggcttaggccttagttttttcaaataggccaagcctatataagcaaagctcggctcggcccggctca 35361819  T
Q  320 ttcccacccctag 332  Q
    |||||||||||||    
T  35361818 ttcccacccctag 35361806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 39 - 331
Target Start/End: Complemental strand, 3289306 - 3289014
Alignment:
Q  39 caattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaac-aatttgatgaacaaac 137  Q
    ||||||||||| ||| ||||||| | ||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||  || | |||||||| ||    
T  3289306 caattgtgttttattggtttaatttgtatctaattaatgtttatctctatattaagtacattgcacaaattgaaaggaaaaaataaatcgatgaacatac 3289207  T
Q  138 tctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttga 237  Q
    |||||||||||||| ||||| ||||||  |||||| |||||||||| |||||   ||  ||||||||||||  ||| |||||||||||||||||||||||    
T  3289206 tctgtttgaaatttctaacacaaactagacttttaaacaggctaataggtcatgccaagcttttaaaaaggctaggtcaggcttaaaataaagtctttga 3289107  T
Q  238 caggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccaccccta 331  Q
    ||  ||||||| | |||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||||||||||    
T  3289106 caaataaaaggtcaaggcttagaccttagttttttcaactaggcctaacctatttaag-aaagcccggctcggcctatctcattcccaccccta 3289014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 13641023 - 13640714
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    ||||||||||| |||||||||| |||||| || ||| ||||||| | ||||||||||||||||||||||| ||| ||||| ||| ||||||||||| ||     
T  13641023 tctatccatctttaaattttacgattgtgctttattggtttaatttgtatctaattaatgtttatctctacattaagtaccttgcacaaattgaaaagaa 13640924  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    | | || | |||||| | ||||| |||||||||||||||| |||||| ||||||||| |||||||| ||  ||  ||  |||||||||||| || | |||    
T  13640923 agaaaaatggatgaatagactctatttgaaatttgtaacacaaactaggcttttagataggctaataggctaggccaagcttttaaaaaggccatgtcag 13640824  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggct 317  Q
    ||||||||||||| ||||||||||||||| ||| ||| ||||||||||| |||||||||||||||   | ||||||||||||||||||||||||| ||||    
T  13640823 gcttaaaataaagcctttgacaggtaaaaagccaaggtttaggccttagatttttcaactaggccagacatatttaagcaaagcccggctcggcccggct 13640724  T
Q  318 cattcccacc 327  Q
    ||||||||||    
T  13640723 cattcccacc 13640714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 65 - 327
Target Start/End: Original strand, 13260329 - 13260592
Alignment:
Q  65 tatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaacaatttg-atgaacaaactctgtttgaaatttgtaacataaact 163  Q
    |||||||||||||||||| | |||||| ||||| ||| ||||||||||||||       |||  ||||||| |||||||||||||||||||||| |||||    
T  13260329 tatctaattaatgtttatatttatattaagtacgttgcacaaattgaaaggaatttttttttttatgaacatactctgtttgaaatttgtaacacaaact 13260428  T
Q  164 aagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggcct 263  Q
    | |||||||||||||||||| || || | ||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| ||    
T  13260429 atgcttttagacaggctaataggccataccatgcttttaaaaaggtcaggccagacttaaaataaagtctttgacaggtaaaaggccaagacttaggtct 13260528  T
Q  264 tagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccacc 327  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||| | ||||||||||||    
T  13260529 tagttttttcaactaggcctagtctatttaagcaaatcccggctcggcccgactcattcccacc 13260592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 51126849 - 51126676
Alignment:
Q  20 tatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaa 119  Q
    |||||||||||| ||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||| ||||| ||| ||||||||||||  |||    
T  51126849 tatccatctatacattttacaactgtgtttcattagtttaacctgtatctaattaatgtttatctctatattaagtacgttgcacaaattgaaag--gaa 51126752  T
Q  120 acaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcag 195  Q
    | || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51126751 aaaaattgatgaacaaactctatttgaaatttgtaacataaactaagcttttagacaggctaataggtcagatcag 51126676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 39 - 303
Target Start/End: Complemental strand, 9856993 - 9856728
Alignment:
Q  39 caattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaacaatttg-atgaacaaac 137  Q
    ||||||||||| ||| ||||||| | ||| |||||||||| |||||||||||| ||||| ||| ||||||||||||||       |||  ||||||| ||    
T  9856993 caattgtgttttattggtttaatttgtatataattaatgtgtatctctatattaagtacgttgcacaaattgaaaggattttttttttttatgaacatac 9856894  T
Q  138 tctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttga 237  Q
    ||| |||||||||||||||| ||| || | ||||||||||  |||| | |||| |||||||||||||||||||  |||||  |||||||||||| |||||    
T  9856893 tctatttgaaatttgtaacacaaattaggtttttagacagattaatagatcaggtcagacttttaaaaaggtcgagccagaattaaaataaagtatttga 9856794  T
Q  238 caggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagccc 303  Q
    || |||||||| | | ||||||| ||| ||||||||||||||||||| |||||||||| |||||||    
T  9856793 caagtaaaaggtcaatgcttaggtcttggttttttcaactaggcctaacctatttaagtaaagccc 9856728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 159 - 331
Target Start/End: Original strand, 12569684 - 12569856
Alignment:
Q  159 aaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaaaaggcctaggctta 258  Q
    |||||| |||||||||||| ||||| || | | |||| ||||||||||||||||| ||| |||||||||||| |||| ||| |||||||| | |||||||    
T  12569684 aaactaggcttttagacagactaataggcctggtcaggcttttaaaaaggtcaggtcagacttaaaataaagcctttaacaagtaaaaggtcaaggctta 12569783  T
Q  259 ggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccaccccta 331  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||| || |||||    
T  12569784 gaccttagttttttcaactaggcctagcctatttaagcaaagcccagctcggcccagctcattcgcatcccta 12569856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 197 - 332
Target Start/End: Complemental strand, 13142476 - 13142341
Alignment:
Q  197 cttttaaaaaggtcaggccaggcttaaaataaagtctttgacagg-taaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaag 295  Q
    |||||||||||| || ||||| |||||||||||| | |||| ||| ||| ||||| |||||||||| ||| |||||||||||||||||  ||||||||||    
T  13142476 cttttaaaaaggccatgccagacttaaaataaagccattgataggctaataggcc-aggcttaggctttaattttttcaactaggcctgacctatttaag 13142378  T
Q  296 caaagcccggctcggcctggctcattcccacccctag 332  Q
    ||||| ||||||||||| |||||||||||| ||||||    
T  13142377 caaagtccggctcggcccggctcattcccaaccctag 13142341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 309
Target Start/End: Complemental strand, 22680788 - 22680645
Alignment:
Q  166 gcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacagg-taaaaggcctaggcttaggcctt 264  Q
    |||||||| ||||||||| ||  ||  | |||||||||| ||| || |||||||||||| ||||| |||||||||| ||| ||||| || ||||| | ||    
T  22680788 gcttttaggcaggctaataggctaggccggacttttaaagaggccacgccaggcttaaagtaaagcctttgacaggctaataggcc-agacttagacttt 22680690  T
Q  265 agttttttcaactaggcctagcctatttaagcaaagcccggctcg 309  Q
     |||||||| |||||| |||||||||||||||||| || ||||||    
T  22680689 ggttttttcgactaggtctagcctatttaagcaaaacctggctcg 22680645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 49831853 - 49831758
Alignment:
Q  210 caggccaggcttaaaataaagtctttgacagg-taaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggc 306  Q
    ||||||||||||||| |||||||||||||||| ||| ||||| |||||||||| |||| ||||  |||| | ||| ||||||||||||||||| ||||    
T  49831853 caggccaggcttaaagtaaagtctttgacaggctaataggcc-aggcttaggctttag-ttttaaaactggacctggcctatttaagcaaagctcggc 49831758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 313
Target Start/End: Original strand, 2753458 - 2753572
Alignment:
Q  199 tttaaaaaggtcaggccaggcttaaaataaagtctttgacagg-taaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagca 297  Q
    ||||||||| ||||| ||| |||||| ||||| |||||| ||| ||| ||| | ||| |||||| |||||||||||||||||||||  | ||||||||||    
T  2753458 tttaaaaagatcagggcagacttaaagtaaagcctttgagaggctaataggtc-aggtttaggctttagttttttcaactaggcctgacatatttaagca 2753556  T
Q  298 aagcccggctcggcct 313  Q
    | || ||| |||||||    
T  2753557 acgctcggttcggcct 2753572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 300
Target Start/End: Original strand, 43403407 - 43403509
Alignment:
Q  198 ttttaaaaaggtcaggccaggcttaaaataaagtctttgaca-ggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagc 296  Q
    |||||||||||||||| ||| ||||||||||||||||||||| | ||| ||| | || |||| || ||| |||||||||||||| ||  | |||||||||    
T  43403407 ttttaaaaaggtcaggtcagacttaaaataaagtctttgacatgctaataggtc-agacttatgctttaattttttcaactaggtctgacttatttaagc 43403505  T
Q  297 aaag 300  Q
    ||||    
T  43403506 aaag 43403509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 180; Significance: 5e-97; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 9458917 - 9458610
Alignment:
Q  21 atccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||| ||| ||||||||||||||  |     
T  9458917 atccatctataaattttacaattgtgtttcattagtttaatttgtatctaattaatgtttatatctatattaagtacgttgcacaaattgaaaggaatat 9458818  T
Q  121 caatttg-atgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggc 219  Q
       |||  ||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||| ||||||  |||||||||||||||||||||||| ||    
T  9458817 ttttttttatgaacatactctttttgaaatttgtaacataaactaggcttttagacaagctaataggtcaggccagacttttaaaaaggtcaggccaagc 9458718  T
Q  220 ttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctca 319  Q
    |||||||||   ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | | ||||    
T  9458717 ttaaaataagacctttgacaggtaaaaggtcaaggcttaggccttagttttttcaactaggcctagcctatttaagaaaagcccggctcggtccgactca 9458618  T
Q  320 ttcccacc 327  Q
    ||||||||    
T  9458617 ttcccacc 9458610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 5734204 - 5734519
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatattt---agtacattgtacaaattgaaag 114  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||    ||||||||||||||||||||||    
T  5734204 tctatacatctataaattttacaattatgtttcattagtttaatctgtatctgattaatgtttatctctatattattaagtacattgtacaaattgaaag 5734303  T
Q  115 gagaaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggc 214  Q
     | ||| || | |||||||| | | |||||||||||||||| |||||||| ||||||||||| |||||| ||  ||| |||| ||||||||||||| |||    
T  5734304 aacaaaaaaat-gatgaacatattttgtttgaaatttgtaatataaactaggcttttagacatgctaataggctagaccagatttttaaaaaggtctggc 5734402  T
Q  215 caggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctg 314  Q
     ||||||||||||||| ||||||||||||||||| | || ||||||||||| ||||||||||||| |||| |||||||||||||||  ||||||| || |    
T  5734403 aaggcttaaaataaagcctttgacaggtaaaaggtcaagacttaggccttaattttttcaactagacctatcctatttaagcaaagttcggctcgacccg 5734502  T
Q  315 gctcattcccaccccta 331  Q
    ||||||| ||| |||||    
T  5734503 gctcatttccatcccta 5734519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 125 - 331
Target Start/End: Original strand, 4920142 - 4920348
Alignment:
Q  125 ttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaa 224  Q
    ||||||||| || | |||||||||||||||||| ||||||  |||||||||||||||||  ||||| |||||||||||||||||||||||||| ||||||    
T  4920142 ttgatgaaccaattatgtttgaaatttgtaacacaaactagacttttagacaggctaataagtcaggtcagacttttaaaaaggtcaggccagacttaaa 4920241  T
Q  225 ataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattccc 324  Q
    |||||||||||||||| ||||| | | ||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| ||  ||||||||||    
T  4920242 ataaagtctttgacagataaaatgtcaaggcttaggccttaggtttttccactaggcctagcttatttaagcaaagcccggctcgccccagctcattccc 4920341  T
Q  325 accccta 331  Q
    |||||||    
T  4920342 accccta 4920348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 26425408 - 26425126
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    |||||||||||||||||||||| || |||||| ||||||| ||| | ||||||||||||||||||||| | ||| ||||| ||| ||||||||||| ||     
T  26425408 tctatccatctataaattttacgatcgtgttttattagttgaatttgtatctaattaatgtttatctcaacattaagtacgttgcacaaattgaaaagaa 26425309  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    | | || | ||||||   ||||| |||||||||||||||| |||| |  ||||||||||||||||| ||||||| ||||||||||||||||||||| ||     
T  26425308 ataaaaatggatgaatggactctatttgaaatttgtaacacaaacaagacttttagacaggctaataggtcagaccagacttttaaaaaggtcaggtcaa 26425209  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaag 300  Q
     ||||||||||||  |||||||||||||||||| ||||||| ||||||||||||||||||| ||||    |||||||||||||    
T  26425208 acttaaaataaagcttttgacaggtaaaaggccaaggcttaagccttagttttttcaactaagcctgaattatttaagcaaag 26425126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 3525934 - 3526247
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    ||||| ||||| |||||||||  ||||||||| ||||||||||| | ||||||||||||||| ||||||||||| | ||| |||  |||||| ||| ||     
T  3525934 tctattcatctgtaaattttatgattgtgttttattagtttaatatgtatctaattaatgttgatctctatattaaatacgttgctcaaattaaaaagaa 3526033  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    | | || ||||||||  |||||| |||||||||| ||||| |||||   ||||||||||   |||| ||| ||| ||||||||||||||| ||||| ||     
T  3526034 agaaaaattgatgaatgaactctatttgaaatttataacaaaaacttgacttttagacaaattaataggttagaacagacttttaaaaagatcaggtcaa 3526133  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggct 317  Q
     ||||||||||||||||||| |||||||||| | ||||||||||||||||||| ||||| ||| |   ||||||||||||||||||| ||||| | ||||    
T  3526134 acttaaaataaagtctttgataggtaaaaggtcaaggcttaggccttagttttatcaaccaggtcagacctatttaagcaaagcccgactcggtccggct 3526233  T
Q  318 cattcccaccccta 331  Q
     |||||||||||||    
T  3526234 tattcccaccccta 3526247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 21523906 - 21523678
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    ||||| |||||||||||||||| ||||||||| ||| ||||||| | |||||||| |||||||||||||| ||| || || ||  ||||||||| | ||     
T  21523906 tctattcatctataaattttacgattgtgttttatttgtttaatgtgtatctaataaatgtttatctctacattaagcacgttacacaaattgagaagaa 21523807  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    | | || | |||||| | ||| | ||| |||||||||||| ||||||  | |||||| |||||| | |||||   || |||||||||||| |||| ||||    
T  21523806 agaaaaatggatgaatagactttatttaaaatttgtaacacaaactagacatttagataggctagtaggtcatgccaaacttttaaaaagatcagaccag 21523707  T
Q  218 gcttaaaataaagtctttgacaggtaaaa 246  Q
     |||||||||||| |||| ||||||||||    
T  21523706 acttaaaataaagcctttaacaggtaaaa 21523678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 328
Target Start/End: Original strand, 27157523 - 27157804
Alignment:
Q  45 tgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaacaatttgatgaacaaactctgttt 144  Q
    ||||| ||||||||||| | ||| ||||||||||||||||||  ||| | ||  ||| ||||||||||| || | | || | ||||||   | ||| |||    
T  27157523 tgttttattagtttaatgtgtatgtaattaatgtttatctctgcattaattatgttgcacaaattgaaaagaaagaaaaatggatgaatggattctattt 27157622  T
Q  145 gaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaa 244  Q
    ||||||||||||| ||||||  |||||| ||| |||||| ||||||  || | |||||||||||||| | ||| |||||||||||    |||||||||||    
T  27157623 gaaatttgtaacacaaactagacttttaaacatgctaataggtcaggacaaatttttaaaaaggtcaagtcagacttaaaataaa--acttgacaggtaa 27157720  T
Q  245 aaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccaccc 328  Q
    ||| || | ||||| |   ||||||||||||||||  |   ||||||||| ||||||| |||||||||  ||||||| ||||||    
T  27157721 aagaccaatgcttaagttatagttttttcaactagatcagacctatttaatcaaagcctggctcggcccagctcatttccaccc 27157804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 12218117 - 12217984
Alignment:
Q  51 attagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaa-acaatttgatgaacaaactctgtttgaaat 149  Q
    ||||||| ||| | ||||||||||||||||||||||||||| ||||| ||| | |||||||||| | || | || || ||||||| ||||| ||| ||||    
T  12218117 attagttgaatttgtatctaattaatgtttatctctatattaagtacgttgcataaattgaaagtaaaacaaaaatttatgaacatactctatttaaaat 12218018  T
Q  150 ttgtaacataaactaagcttttagacaggctaat 183  Q
    |||||||| |||||| | ||||| ||||||||||    
T  12218017 ttgtaacacaaactaggtttttaaacaggctaat 12217984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 331
Target Start/End: Original strand, 21857756 - 21857872
Alignment:
Q  215 caggcttaaaataaagtctttgacagg-taaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcct 313  Q
    ||||||||||||||||||||||||||| ||| ||| | || ||||||| |||||||||| ||||||||    |||||| ||| |||| |||||||| ||     
T  21857756 caggcttaaaataaagtctttgacaggctaataggtc-agacttaggctttagtttttttaactaggctcgacctattaaagtaaagtccggctcgaccc 21857854  T
Q  314 ggctcattcccaccccta 331  Q
    ||||||||||||||||||    
T  21857855 ggctcattcccaccccta 21857872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 5515681 - 5515740
Alignment:
Q  251 taggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcgg 310  Q
    ||||||||| | |||||||||||||||||| ||  ||||||||||||||| || ||||||    
T  5515681 taggcttagactttagttttttcaactaggtctgacctatttaagcaaagtccagctcgg 5515740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 9822450 - 9822404
Alignment:
Q  196 acttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggt 242  Q
    |||||||||||||||| | ||| ||||||||||||| ||||||||||    
T  9822450 acttttaaaaaggtcatgtcagacttaaaataaagtttttgacaggt 9822404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 10724375 - 10724329
Alignment:
Q  196 acttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggt 242  Q
    |||||||||||||||| | ||| ||||||||||||| ||||||||||    
T  10724375 acttttaaaaaggtcatgtcagacttaaaataaagtttttgacaggt 10724329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 328
Target Start/End: Complemental strand, 12217890 - 12217849
Alignment:
Q  287 ctatttaagcaaagcccggctcggcctggctcattcccaccc 328  Q
    |||||||| |||||||||||||| |||| |||||||||||||    
T  12217890 ctatttaatcaaagcccggctcgacctgactcattcccaccc 12217849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 29442740 - 29442428
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||||  ||| ||||||||||||||     
T  29442740 tctatccatctataaattttagaattgtgtttcattagtttaatctgtatataattaatggttatctctatattaagtatgttgcacaaattgaaaggaa 29442641  T
Q  118 aaacaatttgat-gaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggcca 216  Q
    ||| |||  ||| ||||||||| |||||||| |||||||||||||||| | |||||||||||||||| ||  ||| ||||||||||||||||||||| ||    
T  29442640 aaaaaat--gatcgaacaaactttgtttgaattttgtaacataaactaggtttttagacaggctaataggctagaccagacttttaaaaaggtcaggaca 29442543  T
Q  217 ggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggc 316  Q
    | |||||||||||| |||||||| |||||||| | ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| ||||||| | |    
T  29442542 gacttaaaataaagcctttgacatgtaaaaggtcaaggcttaagccttagttttttcaactaggcctaacctatttaagcaaagtccgactcggcccgac 29442443  T
Q  317 tcattcccaccccta 331  Q
    |||||||||||||||    
T  29442442 tcattcccaccccta 29442428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 27209337 - 27209026
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    ||||||||||||||| |||||||||||||||| ||||||||||| | ||||| |||||| ||||| |||||||| ||||| ||| |||||||||||| |     
T  27209337 tctatccatctataatttttacaattgtgttttattagtttaatttgtatctgattaatatttatatctatattaagtacgttgcacaaattgaaagaaa 27209238  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    ||| |  |||||||||||||||| |||||||||||||| | ||||||  |||||| |||||||||| |||||| | |||||||||||||||||||| |||    
T  27209237 aaaaa--ttgatgaacaaactctttttgaaatttgtaatacaaactatacttttaaacaggctaataggtcaggttagacttttaaaaaggtcaggtcag 27209140  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggct 317  Q
     ||||||||||||||| |||||  ||||||| | ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| || | ||    
T  27209139 acttaaaataaagtctatgacatataaaaggtcaaggcttatgccttagttttttcaactaggcctaacctatttaagcaaagcccgactcgacccgact 27209040  T
Q  318 cattcccaccccta 331  Q
    |||| |||||||||    
T  27209039 catttccaccccta 27209026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 6635892 - 6635600
Alignment:
Q  20 tatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaa 119  Q
    ||||||||||||||||| |||||| ||||| |||| |||||| | ||||||||||||||||||||||| ||| ||||  ||| ||||||||||| || |     
T  6635892 tatccatctataaatttcacaattttgttttattattttaatgtgtatctaattaatgtttatctctacattaagtatgttggacaaattgaaaagaaag 6635793  T
Q  120 acaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggc 219  Q
    | || | ||||||  |||||| ||||||| | |||| | |||||| ||||||||||| |||||| |||||   || |||||||||||||||||| ||  |    
T  6635792 aaaaatagatgaatgaactctatttgaaactcgtaatacaaactaggcttttagacaagctaataggtcaagccaaacttttaaaaaggtcaggtcaaac 6635693  T
Q  220 ttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcc 312  Q
    |||||||||||||||||||| |||||||| | | |||||| ||||||||||||||||||||||   |||||||||||||| | | ||||||||    
T  6635692 ttaaaataaagtctttgacaagtaaaaggtcaaagcttagaccttagttttttcaactaggccagacctatttaagcaaaactcagctcggcc 6635600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 6628093 - 6627801
Alignment:
Q  20 tatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaa 119  Q
    ||||||||||||||||| |||||| ||||| |||| |||||| | ||||||||||||||||||||||| ||| ||||  ||| ||||||||||| || |     
T  6628093 tatccatctataaatttcacaattttgttttattattttaatgtgtatctaattaatgtttatctctacattaagtatgttggacaaattgaaaagaaag 6627994  T
Q  120 acaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggc 219  Q
    | || | ||||||  |||||| ||||||| | |||| | |||||| ||||||||||| |||||| |||||    | |||||||||||||||||| ||  |    
T  6627993 aaaaatagatgaatgaactctatttgaaactcgtaatacaaactaggcttttagacaagctaataggtcaagcaaaacttttaaaaaggtcaggtcaaac 6627894  T
Q  220 ttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcc 312  Q
    |||||||||||||||||||| |||||||| | | |||||| ||||||||||||||||||||||   |||||||||||||| | | ||||||||    
T  6627893 ttaaaataaagtctttgacaagtaaaaggtcaaagcttagaccttagttttttcaactaggccagacctatttaagcaaaactcagctcggcc 6627801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 8109468 - 8109213
Alignment:
Q  20 tatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaa 119  Q
    |||||||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||| || || ||| ||||  ||| |||| |||||| || |     
T  8109468 tatccatctataaattttacgattgtgttttattagtttaatgtgtatctaattaatgtttacctatacatt-agtatgttgcacaa-ttgaaaagaaag 8109371  T
Q  120 acaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggc 219  Q
    | || | |||||| ||||||| ||| |||| |||||||||||||| ||||||||||||  |||| |||||| |||||||||||||||    |||||| ||    
T  8109370 aaaaatggatgaataaactctattttaaatatgtaacataaactaggcttttagacagattaataggtcagttcagacttttaaaaaaactaggccaagc 8109271  T
Q  220 ttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaact 277  Q
    ||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||    
T  8109270 ttaaaataaagcctttgaccggtaaaaggccaaagcttaggccttagttttttcaact 8109213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 29909761 - 29910070
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||||||||||  |||| ||| ||||  ||  ||||||||||| ||     
T  29909761 tctatccatctataaattttacgattgtgttttattagtttaatgtgtatctaattaatgtttagttctacattaagtatgttccacaaattgaaaagaa 29909860  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    | | || | ||||||  |||||| ||||| |||| |||| ||||||| |||||||||| ||||||| ||||||| |||||||| ||||||| ||| | |     
T  29909861 agaaaaatggatgaatgaactctatttgatatttataacctaaactaggcttttagaccggctaataggtcagaccagactttaaaaaaggccagacgaa 29909960  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggct 317  Q
    |||||||| |||  |||  | || ||||||||| ||||||| || ||| |||| ||||| ||  ||  |||||||||||||||||||||||| |||  ||    
T  29909961 gcttaaaacaaaaccttgaagagataaaaggccaaggcttaagctttaattttatcaaccagatctgacctatttaagcaaagcccggctcgacctaact 29910060  T
Q  318 cattcccacc 327  Q
    ||||||||||    
T  29910061 cattcccacc 29910070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 5938281 - 5938579
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| | |||||| |||||||||||||||| ||| ||||| ||| ||||||||||   |     
T  5938281 tctatccatctataaattttacgattgtgttttattagtttaatgtgtatctagttaatgtttatctctacattaagtacgttgcacaaattgaacataa 5938380  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    | | || | ||||||    |||| |||||||||||||||| |  ||| | |||||||||||||  | ||||||  ||||| ||||||||||  ||||||     
T  5938381 agaaaaatggatgaatggtctctatttgaaatttgtaacacagcctaggtttttagacaggctcttaggtcaggccagac-tttaaaaaggctaggccaa 5938479  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggct 317  Q
    | |||||||||||  ||||||| |||||| |||       ||||||||||||||  |||||||||   ||||||||| |||||  |||||||| |  |||    
T  5938480 gtttaaaataaagcgtttgacaagtaaaaagcc------aaggccttagtttttctaactaggccagacctatttaaacaaagatcggctcggtccagct 5938573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 331
Target Start/End: Original strand, 14266437 - 14266571
Alignment:
Q  197 cttttaaaaaggtcaggccaggcttaaaataaagtctttgacagg-taaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaag 295  Q
    |||||||||||||||| |||| |||||||||||| |||||||||| ||| |||   |||||||| | ||| |||||||||||||||||  ||||||||||    
T  14266437 cttttaaaaaggtcagaccagacttaaaataaagcctttgacaggctaagaggtg-aggcttagactttaattttttcaactaggcctgacctatttaag 14266535  T
Q  296 caaagcccggctcggcctggctcattcccaccccta 331  Q
    |||||||| |||||| | |||  |||||||||||||    
T  14266536 caaagcccagctcggtccggcctattcccaccccta 14266571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 336
Target Start/End: Complemental strand, 42279946 - 42279809
Alignment:
Q  198 ttttaaaaaggtcaggccaggcttaaaataaagtctttgacagg-taaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagc 296  Q
    |||||||||||||||| ||||||| ||| |||| |||||||| | ||| ||||| ||||||| |  |||||||||||||||||||   ||||||||||||    
T  42279946 ttttaaaaaggtcaggtcaggctttaaaaaaagcctttgacaagctaataggcc-aggcttaagttttagttttttcaactaggctcggcctatttaagc 42279848  T
Q  297 aaagcccggctcggcctggctcattcccacccctagccgc 336  Q
    ||||||| ||| |||| | |||||||||| ||||| ||||    
T  42279847 aaagcccagct-ggcccgactcattcccagccctaaccgc 42279809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 297
Target Start/End: Complemental strand, 10583072 - 10582954
Alignment:
Q  179 ctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaaa-aggcctaggcttaggccttagttttttcaact 277  Q
    ||||| ||||||| |  |||||||| ||||| || |||||||| | |||||| ||||||||| | || ||| | |||||||| | |||||||||||||||    
T  10583072 ctaataggtcagaacgaacttttaagaaggttagaccaggcttcatataaagcctttgacagattaataggtc-aggcttagactttagttttttcaact 10582974  T
Q  278 aggcctagcctatttaagca 297  Q
    || |||| ||||||||||||    
T  10582973 agacctaccctatttaagca 10582954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 13582329 - 13582256
Alignment:
Q  168 ttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacagg 241  Q
    ||||||||| |||||| || ||||||  ||||||||||||| |||| || | || |||||||| ||||||||||    
T  13582329 ttttagacatgctaatagggcagatcgaacttttaaaaaggccaggtcaagtttgaaataaagcctttgacagg 13582256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 14858152 - 14858193
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagttta 59  Q
    |||||||||||||||||||||||| ||||||| |||| ||||    
T  14858152 tctatccatctataaattttacaactgtgttttattaattta 14858193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 18421628 - 18421563
Alignment:
Q  20 tatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctcta 87  Q
    |||| ||||||||||||||  ||||| ||  ||||||||||||| ||||||||| || ||||||||||    
T  18421628 tatcgatctataaattttatgattgtttt--attagtttaatctgtatctaattgatatttatctcta 18421563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 25887792 - 25887748
Alignment:
Q  196 acttttaaaaaggtcaggccaggcttaaaataaagtctttgacag 240  Q
    |||||||||||||| ||| |||| |||||||||||| ||||||||    
T  25887792 acttttaaaaaggttaggtcaggtttaaaataaagtttttgacag 25887748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 7e-90; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 41534753 - 41535059
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||| ||||||||| ||||||||||| |      
T  41534753 tctatccatctataaattttacaattgtgttttattagtttaatttgtatctaattaatgtttatcactatattaagtacattgcacaaattgaaacgga 41534852  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    ||| ||  ||||||||| ||||||||||||||||||||| ||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||| ||    
T  41534853 aaaaaaaatgatgaacatactctgtttgaaatttgtaacttaaactaggtttttagataggctaataggtcagaccagacttttaaaaaggtcaggctag 41534952  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggct 317  Q
    |||||||||||||       | |||||| |||| || ||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||   ||    
T  41534953 gcttaaaataaag-------ccggtaaacggccaagacttaggccttaattttttcaactaggcctagcctatttaaccaaagcccggctcagcccaact 41535045  T
Q  318 cattcccaccccta 331  Q
    ||||||||||||||    
T  41535046 cattcccaccccta 41535059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 40355915 - 40356196
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    ||||||||||||||| ||||||| |||||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||  ||| |||||| |||||||     
T  40355915 tctatccatctataatttttacagttgtgtttcattagcttaatctgtatataattaatgtttatctctatattaagtatgttgcacaaatggaaaggaa 40356014  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    ||| |  |||||||||| |||||||||||||||||||||||||| || |||||||||||| |||||  |||||| ||||||||||||||||||||| ||     
T  40356015 aaaaa--ttgatgaacatactctgtttgaaatttgtaacataaattaggcttttagacagactaatatgtcagaccagacttttaaaaaggtcaggtcat 40356112  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagc 301  Q
    |||||||||||||||||||| |||||||||||| || |||||||||||||||||||||| ||||||||||||| ||| ||||||    
T  40356113 gcttaaaataaagtctttgagaggtaaaaggccaagacttaggccttagttttttcaacaaggcctagcctatctaaacaaagc 40356196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 39 - 331
Target Start/End: Original strand, 38855478 - 38855769
Alignment:
Q  39 caattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaacaatttgatgaacaaact 138  Q
    ||||||||||| ||| ||||||| | ||||||||||||||||||||| ||||| ||||| ||| |||||||||||| | ||| | || |||||| | | |    
T  38855478 caattgtgttttattggtttaatttgtatctaattaatgtttatctccatattaagtacgttgcacaaattgaaagaaaaaa-atttcgatgaatataat 38855576  T
Q  139 ctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgac 238  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| || |||   || |||||||||||| ||||||| ||||||||||||| |||||||    
T  38855577 ctgtttgaaatttgtaacacaaactaggcttttagacaggctaataggccaggctaggcttttaaaaaggccaggccatgcttaaaataaagcctttgac 38855676  T
Q  239 aggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccaccccta 331  Q
     ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||    
T  38855677 gggtaaaaggccaaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagccccgctcggcccgactcattcccaccccta 38855769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 5305704 - 5305397
Alignment:
Q  19 ctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggaga 118  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||| ||| ||||| ||  ||||||||||| || |    
T  5305704 ctatcaatctataaattttacgattgtgttttattagtttaatttgtatctaattaatgtttatctctacattaagtacgttccacaaattgaaaagaaa 5305605  T
Q  119 aacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccagg 218  Q
     | || | ||||||   ||||| |||||||||||||||| |||| |  |||||||| |||||||| ||||||| ||| |||||||||||| |||| ||||    
T  5305604 taaaaatggatgaatggactctatttgaaatttgtaacacaaacaagacttttagataggctaataggtcagaccaggcttttaaaaaggccaggtcagg 5305505  T
Q  219 cttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcgg-cctggct 317  Q
    |||||||||||| ||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||    
T  5305504 cttaaaataaagcctttgacgggtaaaaggccaagtcttaggccttagttttttcaactaggcctggcctatttaagcaaagcccggctcggcccgggct 5305405  T
Q  318 cattccca 325  Q
    ||||||||    
T  5305404 cattccca 5305397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 24 - 304
Target Start/End: Complemental strand, 12068779 - 12068500
Alignment:
Q  24 catctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaacaa 123  Q
    |||| ||||||||||||||| ||||| ||||||||||| | |||||||||||||||| ||| |||||| |||| ||||||||||||||||||| ||| ||    
T  12068779 catcaataaattttacaattctgttttattagtttaatttgtatctaattaatgtttgtctttatattaagtatattgtacaaattgaaaggaaaaaaaa 12068680  T
Q  124 tttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaa 223  Q
    ||||||||| | ||| |||||||||||||||||| ||||||   |||||| ||||||||| ||||||| || ||||||||||||| || ||||| |||||    
T  12068679 tttgatgaaaagactttgtttgaaatttgtaacacaaactagatttttagtcaggctaataggtcagaccatacttttaaaaaggccaagccagacttaa 12068580  T
Q  224 aataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccg 304  Q
    ||||||| |||||||||| ||||||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12068579 aataaagcctttgacaggcaaaagg-taaggcttaggctttagttttttcaactaggcctagcctatttaagcaaagcccg 12068500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 39 - 331
Target Start/End: Complemental strand, 30487896 - 30487607
Alignment:
Q  39 caattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaacaatttgatgaacaaact 138  Q
    ||||||||||| ||||||||||| | |||||||||| ||||||||| |||||| ||||  ||| |||||||||||||| ||| ||  |||||||||||||    
T  30487896 caattgtgttttattagtttaatttgtatctaattagtgtttatctatatattaagtatgttgcacaaattgaaaggaaaaaaaaaatgatgaacaaact 30487797  T
Q  139 ctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgac 238  Q
    ||||||||||||| ||||  |||||| ||||||||||||||||||     |||  ||||||||||||||||||| |||||||||||||||||||||||||    
T  30487796 ctgtttgaaatttataactcaaactaggcttttagacaggctaat-----agactagacttttaaaaaggtcagaccaggcttaaaataaagtctttgac 30487702  T
Q  239 aggtaaaaggcctaggcttaggccttagtt--ttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccaccccta 331  Q
    | |||||||||| |  ||||||||||||||  |||||||||||||||||||||||||||||||  |||||||| || | |||||| || ||||||    
T  30487701 aagtaaaaggccaaaacttaggccttagttttttttcaactaggcctagcctatttaagcaaaatccggctcgacccgactcatttcctccccta 30487607  T

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Target: chr2; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 15440526 - 15440786
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    ||||||||||||||||||||  |||||||||| ||||||||||| | |||||||| |||||||||||||||||| ||||| ||| |||  || ||| ||     
T  15440526 tctatccatctataaattttt-aattgtgttttattagtttaatttgtatctaatcaatgtttatctctatattaagtacgttgcacag-ttaaaaagaa 15440623  T
Q  118 aaacaat-ttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggcca 216  Q
    ||||||  ||||||||  |||||| ||| |||||||||||| |||||| ||||||||||| |||||| || ||||  ||||||||||||||||||||||     
T  15440624 aaacaaaattgatgaaagaactctatttaaaatttgtaacacaaactaggcttttagacatgctaataggccagactagacttttaaaaaggtcaggccg 15440723  T
Q  217 ggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactagg 280  Q
    | |||||||||||||||||||||||| ||||||| ||| |||||| |||| |||||||||||||    
T  15440724 gacttaaaataaagtctttgacaggttaaaggccaaggtttaggcattag-tttttcaactagg 15440786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 128 - 332
Target Start/End: Complemental strand, 34639923 - 34639721
Alignment:
Q  128 atgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaata 227  Q
    ||||||| ||||| ||||||||| |||||| ||||||| ||||||||||||||||| |  ||| |||| ||||||||||||||||||||| |||||||||    
T  34639923 atgaacatactctctttgaaattcgtaacacaaactaaacttttagacaggctaatagtccaggtcaggcttttaaaaaggtcaggccagacttaaaata 34639824  T
Q  228 aagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccacc 327  Q
    |||||||||||| |||||||  | ||||||||||||||    |||||||||| |||||||||||||||||||||||||||||| | |||||||||||||     
T  34639823 aagtctttgacaagtaaaagctcaaggcttaggcctta--actttcaactagacctagcctatttaagcaaagcccggctcggtccggctcattcccact 34639726  T
Q  328 cctag 332  Q
    |||||    
T  34639725 cctag 34639721  T

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Target: chr2; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 125 - 328
Target Start/End: Complemental strand, 38119672 - 38119469
Alignment:
Q  125 ttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaa 224  Q
    |||||||||||||| |||||||||||||||||| ||||||  ||||||||||| ||||| |  |||| ||  ||||||||||||||||| ||||||||||    
T  38119672 ttgatgaacaaactttgtttgaaatttgtaacacaaactagacttttagacagactaatagaccagaccatgcttttaaaaaggtcaggtcaggcttaaa 38119573  T
Q  225 ataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattccc 324  Q
    |||||  ||||||| |||||||| || ||| |||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||||  ||||||||||    
T  38119572 ataaaacctttgaccggtaaaagaccaaggtttaggctttatttttttcaactaggcctaacctatttaagcaaagcctggctcggcccagctcattccc 38119473  T
Q  325 accc 328  Q
    ||||    
T  38119472 accc 38119469  T

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Target: chr2; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 71 - 331
Target Start/End: Original strand, 42472395 - 42472650
Alignment:
Q  71 attaatgtttatctctatatttagtacattgtacaaattgaaaggagaaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttt 170  Q
    |||||||||||||| |||||| ||||  ||| ||||||||||| || | | || | ||||||    |||| |||||||||||||||| |||||| |||||    
T  42472395 attaatgtttatctttatattaagtatgttgcacaaattgaaaagaaagaaaaatggatgaatggtctctatttgaaatttgtaacacaaactaggcttt 42472494  T
Q  171 tagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagtttt 270  Q
    ||||||||||||| ||  ||      ||||||||||||||||| || ||||||||||||| |||| ||||||||||| ||||| ||||| ||||||||||    
T  42472495 tagacaggctaataggctagg-----cttttaaaaaggtcaggtcatgcttaaaataaagcctttcacaggtaaaagacctagacttagaccttagtttt 42472589  T
Q  271 ttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccaccccta 331  Q
    |||||||||  |   |||||||||| |||||| || ||| || | ||||||||||||||||    
T  42472590 ttcaactagatcagacctatttaaggaaagcctgggtcgacccgactcattcccaccccta 42472650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 166 - 331
Target Start/End: Complemental strand, 19090004 - 19089850
Alignment:
Q  166 gcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggcctta 265  Q
    |||||||||||||||||| |||||  |||| |||||||||||||||| ||| |||||||||||||||||||| |||  ||           || || |||    
T  19090004 gcttttagacaggctaataggtcaagtcaggcttttaaaaaggtcagaccaagcttaaaataaagtctttgataggctaa-----------taagcttta 19089916  T
Q  266 gttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccaccccta 331  Q
    ||||||||||||| ||  |||||||||||||||||||||||| | ||   ||||||||||||||||    
T  19089915 gttttttcaactaagctcagcctatttaagcaaagcccggcttgacccatctcattcccaccccta 19089850  T

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Target: chr2; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 30617153 - 30617089
Alignment:
Q  252 aggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggc 316  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  30617153 aggcttaggctttagttttttcaactaggcctggcctatttaagcaaagctcggctaggcctggc 30617089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 45571235 - 45571316
Alignment:
Q  159 aaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag 240  Q
    |||||||||||||||||| |||||| ||| |  |||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  45571235 aaactaagcttttagacatgctaataggttatgtcagactttttaaaaggtcaaaccaaacttaaaataaagtctttgacag 45571316  T

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Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 45574902 - 45574983
Alignment:
Q  159 aaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag 240  Q
    |||||||||||||||||| |||||| ||| |  |||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  45574902 aaactaagcttttagacatgctaataggttatgtcagactttttaaaaggtcaaaccaaacttaaaataaagtctttgacag 45574983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 45578569 - 45578650
Alignment:
Q  159 aaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag 240  Q
    |||||||||||||||||| |||||| ||| |  |||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  45578569 aaactaagcttttagacatgctaataggttatgtcagactttttaaaaggtcaaaccaaacttaaaataaagtctttgacag 45578650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 45582236 - 45582317
Alignment:
Q  159 aaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag 240  Q
    |||||||||||||||||| |||||| ||| |  |||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  45582236 aaactaagcttttagacatgctaataggttatgtcagactttttaaaaggtcaaaccaaacttaaaataaagtctttgacag 45582317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 45585903 - 45585984
Alignment:
Q  159 aaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag 240  Q
    |||||||||||||||||| |||||| ||| |  |||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  45585903 aaactaagcttttagacatgctaataggttatgtcagactttttaaaaggtcaaaccaaacttaaaataaagtctttgacag 45585984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 45589570 - 45589651
Alignment:
Q  159 aaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag 240  Q
    |||||||||||||||||| |||||| ||| |  |||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  45589570 aaactaagcttttagacatgctaataggttatgtcagactttttaaaaggtcaaaccaaacttaaaataaagtctttgacag 45589651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 45593237 - 45593318
Alignment:
Q  159 aaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag 240  Q
    |||||||||||||||||| |||||| ||| |  |||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  45593237 aaactaagcttttagacatgctaataggttatgtcagactttttaaaaggtcaaaccaaacttaaaataaagtctttgacag 45593318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 45596904 - 45596985
Alignment:
Q  159 aaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag 240  Q
    |||||||||||||||||| |||||| ||| |  |||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  45596904 aaactaagcttttagacatgctaataggttatgtcagactttttaaaaggtcaaaccaaacttaaaataaagtctttgacag 45596985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 45600571 - 45600652
Alignment:
Q  159 aaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag 240  Q
    |||||||||||||||||| |||||| ||| |  |||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  45600571 aaactaagcttttagacatgctaataggttatgtcagactttttaaaaggtcaaaccaaacttaaaataaagtctttgacag 45600652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 45604238 - 45604319
Alignment:
Q  159 aaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag 240  Q
    |||||||||||||||||| |||||| ||| |  |||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  45604238 aaactaagcttttagacatgctaataggttatgtcagactttttaaaaggtcaaaccaaacttaaaataaagtctttgacag 45604319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 45607905 - 45607986
Alignment:
Q  159 aaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag 240  Q
    |||||||||||||||||| |||||| ||| |  |||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  45607905 aaactaagcttttagacatgctaataggttatgtcagactttttaaaaggtcaaaccaaacttaaaataaagtctttgacag 45607986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 45611572 - 45611653
Alignment:
Q  159 aaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag 240  Q
    |||||||||||||||||| |||||| ||| |  |||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  45611572 aaactaagcttttagacatgctaataggttatgtcagactttttaaaaggtcaaaccaaacttaaaataaagtctttgacag 45611653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 45615239 - 45615320
Alignment:
Q  159 aaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag 240  Q
    |||||||||||||||||| |||||| ||| |  |||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  45615239 aaactaagcttttagacatgctaataggttatgtcagactttttaaaaggtcaaaccaaacttaaaataaagtctttgacag 45615320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 328
Target Start/End: Original strand, 19284807 - 19284880
Alignment:
Q  255 cttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccaccc 328  Q
    ||||||| |||  |||||||||||||| | || |||||||| ||| |||||||||||| |||||||||||||||    
T  19284807 cttaggctttacgtttttcaactaggcttggcgtatttaagtaaatcccggctcggcccggctcattcccaccc 19284880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 32980406 - 32980326
Alignment:
Q  252 aggcttaggccttagttttttcaa-ctaggcctagcctatttaagcaaagcccggctcggcctggctcattcccaccccta 331  Q
    ||||||||||||||||||||| || |||| ||   |||||||||||||||||  |||| ||| ||||||||||||||||||    
T  32980406 aggcttaggccttagtttttttaaactagtccagacctatttaagcaaagcctagctcagcccggctcattcccaccccta 32980326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 34640015 - 34639974
Alignment:
Q  20 tatccatctataaattttacaattgtgtttcattagtttaat 61  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  34640015 tatccatctataaattttacaattgtgatttattagtttaat 34639974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 39 - 332
Target Start/End: Original strand, 16166566 - 16166859
Alignment:
Q  39 caattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaacaatttgatgaacaaact 138  Q
    ||||||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||  ||| |||||||||||||| ||| || |||||||  |||||    
T  16166566 caattgtgttttattagtttaatttgtatctaattaatgtttatctctatattaagtatgttgcacaaattgaaaggaaaaaaaagttgatgagtaaact 16166665  T
Q  139 ctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgac 238  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||| || ||    || |||||||||||| |||| |||||||||||||||| ||| |||    
T  16166666 ctgtttgaaatttataacacaaactaggcttttagacaggctaataggccatgctaggcttttaaaaaggccaggtcaggcttaaaataaagccttggac 16166765  T
Q  239 aggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccacccctag 332  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||    
T  16166766 aggtaaaaggccaaggtttaggccttagttttttcaactaggcctagcttatttaagcaatgtccggctcggcccggctcattcccacccctag 16166859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 693111 - 692800
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    |||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||| ||||||||| ||||| ||| ||||||||||   ||    
T  693111 tctatccatctataaattttacaattgtgttttattaatttaatttgtatctaattaatgtttacctctatattaagtacgttgcacaaattgaa---ag 693015  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    ||| || |||||||||  |||||||||||||||||||||| | || |  |||||| |||||||||| ||||| | |||||||||||||||||||||||||    
T  693014 aaaaaaattgatgaacggactctgtttgaaatttgtaacacagaccagacttttaaacaggctaataggtcataccagacttttaaaaaggtcaggccag 692915  T
Q  218 gcttaaaataaagtctttgaca-ggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggc 316  Q
     |||||||||||  |||||||| ||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||  | | |    
T  692914 acttaaaataaatcctttgacatggtaaaaggccaagacttaggtcttagttttttcaactaggcctagcctatttaagcaaagcccgactcgatccgac 692815  T
Q  317 tcattcccaccccta 331  Q
    ||||||||| |||||    
T  692814 tcattcccagcccta 692800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 22293257 - 22293570
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    ||||||||||| |||||||||| |||||  || ||||||||||| | ||||||||||||||||||||||| ||| ||||| |||  |||||||||| ||     
T  22293257 tctatccatctttaaattttacgattgtactttattagtttaatttgtatctaattaatgtttatctctacattaagtaccttgctcaaattgaaaagaa 22293356  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    | | || | |||||| ||||||| |||||||||||||||| ||||||  ||||||||||||||||| ||  ||| ||  ||||||||||||||||||||     
T  22293357 agaaaaatggatgaataaactctatttgaaatttgtaacacaaactagacttttagacaggctaataggctagaccaagcttttaaaaaggtcaggccaa 22293456  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggct 317  Q
     ||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||| |  ||||||||||||||||  |||||||||  ||||    
T  22293457 acttaaaataaagtatttgacaggtaaaaggccaaggcttaggccttagatttttcaactaggtcaggcctatttaagcaaagttcggctcggctcggct 22293556  T
Q  318 cattcccaccccta 331  Q
    ||||||||||||||    
T  22293557 cattcccaccccta 22293570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 22300253 - 22300562
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    ||||||||||| |||||||||| |||||| || ||| ||||||| | ||||||||||||||||||||||| ||| ||||| ||| ||||||||||| ||     
T  22300253 tctatccatctttaaattttacgattgtgctttattggtttaatttgtatctaattaatgtttatctctacattaagtaccttgcacaaattgaaaagaa 22300352  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    | | || | |||||| | ||||| |||||||||||||||| |||||| ||||||||| |||||||| ||  ||  ||  |||||||||||| || | |||    
T  22300353 agaaaaatggatgaatagactctatttgaaatttgtaacacaaactaggcttttagataggctaataggctaggccaagcttttaaaaaggccatgtcag 22300452  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggct 317  Q
    ||||||||||||| ||||||||||||||| ||| ||| ||||||||||| |||||||||||||||   | ||||||||||||||||||||||||| ||||    
T  22300453 gcttaaaataaagcctttgacaggtaaaaagccaaggtttaggccttagatttttcaactaggccagacatatttaagcaaagcccggctcggcccggct 22300552  T
Q  318 cattcccacc 327  Q
    ||||||||||    
T  22300553 cattcccacc 22300562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 134 - 332
Target Start/End: Complemental strand, 4127415 - 4127218
Alignment:
Q  134 aaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtct 233  Q
    ||||| ||||| |||||||||| | ||| || |||||||||||||||||| |||||| |||| |||||||||||| ||| ||||||||||||||||| ||    
T  4127415 aaactatgtttcaaatttgtaa-acaaagtaggcttttagacaggctaattggtcaggtcaggcttttaaaaaggccagaccaggcttaaaataaagcct 4127317  T
Q  234 ttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccacccctag 332  Q
    ||||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||| || ||||||    
T  4127316 ttgacaggtaaaaggccaaggcttaggccttaggtttttccgctaggcctagcctatttaagcaaagcccgactcggcccggctcattctcatccctag 4127218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 15055552 - 15055375
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    |||||||||||||||||||||| ||||||||| |||| |||||| | ||| ||||||||||||||||||| ||| ||||  ||||||||||||||| ||     
T  15055552 tctatccatctataaattttacgattgtgttttattaatttaatgtgtatttaattaatgtttatctctacattaagtatgttgtacaaattgaaaagaa 15055453  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcag 195  Q
    | | || | |||| |    |||| |||||||||||||||| | |||||||||||||||||  |||| ||||| |||||    
T  15055452 agaaaaatggatgcatgggctctatttgaaatttgtaacacagactaagcttttagacagagtaataggtcaaatcag 15055375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 272
Target Start/End: Original strand, 16464069 - 16464206
Alignment:
Q  135 aactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctt 234  Q
    |||||| |||||||||||||||| ||||||||||||||||||| ||||| |   ||| || |||||||||||||| ||||||  ||||| ||||||||||    
T  16464069 aactctatttgaaatttgtaacacaaactaagcttttagacagactaatagactagaccaaacttttaaaaaggttaggccaaacttaatataaagtctt 16464168  T
Q  235 tgacaggtaaaaggcctaggcttaggccttagtttttt 272  Q
    ||   | |||||| || |||||||||||||||||||||    
T  16464169 tgctggataaaagaccaaggcttaggccttagtttttt 16464206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 6139120 - 6139240
Alignment:
Q  208 gtcaggccaggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggct 307  Q
    |||||||||  ||||||||||||  |||||  ||||||||||| |||||||||||||||||||||||| |||| |  |||||||||||||||| | | ||    
T  6139120 gtcaggccaaacttaaaataaagcatttgaggggtaaaaggccaaggcttaggccttagttttttcaattaggtcaggcctatttaagcaaagtcagact 6139219  T
Q  308 cggcctggctcattcccaccc 328  Q
    ||||| |||||||||||||||    
T  6139220 cggcccggctcattcccaccc 6139240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 299
Target Start/End: Complemental strand, 17314013 - 17313890
Alignment:
Q  176 aggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgacagg-taaaaggcctaggcttaggccttagttttttca 274  Q
    ||||||||  ||||| || ||||||||||| || || ||||| |||||||||||  |||||||| | ||| ||| | || |||| || ||||||||||||    
T  17314013 aggctaatatgtcaggtcggacttttaaaatggccaagccagacttaaaataaaacctttgacaagctaataggtc-agacttacgctttagttttttca 17313915  T
Q  275 actaggcctagcctatttaagcaaa 299  Q
    |||||||||| ||||||||||||||    
T  17313914 actaggcctaacctatttaagcaaa 17313890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 6138963 - 6139117
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    |||||||||| || |||||||| ||||||||| ||||||| ||| | ||||||||||||||||||           |||  |||  |||||||||| ||     
T  6138963 tctatccatccatcaattttacgattgtgttttattagttaaatgtgtatctaattaatgtttat-----------gtatgttgctcaaattgaaaagat 6139051  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaat 183  Q
    | | || | ||||||  |||||  ||||||||||||||||||||||| ||||||||||||||||||    
T  6139052 agaaaaatggatgaatgaactccatttgaaatttgtaacataaactaggcttttagacaggctaat 6139117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 327
Target Start/End: Complemental strand, 29426802 - 29426727
Alignment:
Q  252 aggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccacc 327  Q
    |||||||||  |||||||||||||||| ||   |||||||||||||||| | |||| ||||| |||||||||||||    
T  29426802 aggcttaggttttagttttttcaactaagctcggcctatttaagcaaagtcgggcttggcctagctcattcccacc 29426727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 16463994 - 16464043
Alignment:
Q  24 catctataaattttacaattgtgtttcattagtttaatctctatctaatt 73  Q
    |||||||||||||||| ||||||||| ||||||||||| | |||||||||    
T  16463994 catctataaattttacgattgtgttttattagtttaatgtgtatctaatt 16464043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 39 - 328
Target Start/End: Original strand, 53200267 - 53200555
Alignment:
Q  39 caattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaacaatttgatgaacaaact 138  Q
    ||||||||||| ||||||||||| | ||||||||||||||||||||||||||| || |  ||| |||||||||||||| ||| |||| ||||||||||||    
T  53200267 caattgtgttttattagtttaatttgtatctaattaatgtttatctctatattaagcatgttgcacaaattgaaaggaaaaaaaatt-gatgaacaaact 53200365  T
Q  139 ctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttgac 238  Q
    ||||||||||||| ||||| |||| | |||||||||||||||||| |||||    || ||||| |||||||||||||||||||||||||||||||||||     
T  53200366 ctgtttgaaatttataacacaaacaaggcttttagacaggctaataggtcaagctaggcttttgaaaaggtcaggccaggcttaaaataaagtctttgat 53200465  T
Q  239 aggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctcattcccaccc 328  Q
    |||||||| ||| |||||||| ||||||||||||||| |||||||||| |||||||||||| ||| |||||||| ||| |||||||||||    
T  53200466 aggtaaaacgccaaggcttagaccttagttttttcaattaggcctagcttatttaagcaaaacccagctcggcccggcccattcccaccc 53200555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 54739629 - 54739940
Alignment:
Q  20 tatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaa 119  Q
    |||||||||||||||||||| ||||||||| ||||||||||| | ||| | ||||||||||||||||| ||| ||||  ||  ||||||||||| ||||     
T  54739629 tatccatctataaattttacgattgtgtttaattagtttaatgtgtatttgattaatgtttatctctacattaagtatgttacacaaattgaaaagagag 54739728  T
Q  120 acaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggc 219  Q
    | || | ||||||   |||||||||||||||||||| | |||||| |||||||||||||||||| ||||||  ||||| |||||||||| ||| ||| ||    
T  54739729 aaaaatggatgaatggactctgtttgaaatttgtaatacaaactaggcttttagacaggctaataggtcaggccagacatttaaaaaggccagaccatgc 54739828  T
Q  220 ttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggctca 319  Q
    |||||||||||  ||||||| |||||||||| ||||||||||||||||| ||||||||||| |  |||||||||||||||| ||  ||||||| | ||||    
T  54739829 ttaaaataaagcatttgacaagtaaaaggccaaggcttaggccttagttgtttcaactaggtcaggcctatttaagcaaaggccaactcggccagactca 54739928  T
Q  320 ttcccaccccta 331  Q
    ||||||||||||    
T  54739929 ttcccaccccta 54739940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 9798220 - 9797931
Alignment:
Q  18 tctatccatctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggag 117  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| | |||||||||||||||||| |||||||| ||| ||||| ||||||||||   ||    
T  9798220 tctatccatctataaattttacaattatgttttattagtttaatttgtatctaattaatgtttatatctatattaagtgcattgcacaaattgaa---ag 9798124  T
Q  118 aaacaatttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccag 217  Q
    ||| || ||||||||||||||||  ||||||||||||||| |||||| ||||||||||||| |||| |||||||                      |||     
T  9798123 aaaaaaattgatgaacaaactctcgttgaaatttgtaacacaaactaggcttttagacaggttaataggtcaga----------------------ccaa 9798046  T
Q  218 gcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggct 317  Q
    |||||||||| || |||||| |||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  9798045 gcttaaaatatagcctttgataggtaaaaggtcaaggcttaggctttagttttttcaactaggcctagcctatttaagcaaagtccggctcggcccggct 9797946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 24 - 304
Target Start/End: Complemental strand, 44028047 - 44027771
Alignment:
Q  24 catctataaattttacaattgtgtttcattagtttaatctctatctaattaatgtttatctctatatttagtacattgtacaaattgaaaggagaaacaa 123  Q
    |||| ||||||||||||||||||||| ||||||||||| | |||||||||||||||| | |||||  | |||| | || ||||||| |||||| ||| |     
T  44028047 catcaataaattttacaattgtgttttattagtttaatttgtatctaattaatgtttgtttctat--taagtatactgcacaaattaaaaggaaaaaaa- 44027951  T
Q  124 tttgatgaacaaactctgtttgaaatttgtaacataaactaagcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaa 223  Q
     ||||| |||||||  |||||||||||||||||| ||||||| ||||||||||||||||| || |||| || | |||||||||||||||| ||| |||||    
T  44027950 -ttgataaacaaacattgtttgaaatttgtaacacaaactaaacttttagacaggctaataggccagaccaaatttttaaaaaggtcaggtcagacttaa 44027852  T
Q  224 aataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccg 304  Q
    ||||||| |||||||   |||||| || || ||||| | ||| |||||||||||||||||| |||||||||||||||||||    
T  44027851 aataaagcctttgaccaataaaagaccaagacttagactttaattttttcaactaggcctaacctatttaagcaaagcccg 44027771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 312
Target Start/End: Original strand, 1070969 - 1071084
Alignment:
Q  197 cttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagc 296  Q
    ||||||||||| |||| | || |||||||||||||| |||| |||||||||||| |||||  ||||||||||||||||| |||| | | ||||||||| |    
T  1070969 cttttaaaaagatcagtctagacttaaaataaagtcattgataggtaaaaggccaaggctcgggccttagttttttcaattaggtcaaacctatttaatc 1071068  T
Q  297 aaagcccggctcggcc 312  Q
    | ||||||||||||||    
T  1071069 agagcccggctcggcc 1071084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 331
Target Start/End: Original strand, 4958007 - 4958143
Alignment:
Q  195 gacttttaaaaaggtcaggccaggcttaaaataaagtctttgacag-gtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctattta 293  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||  ||| ||| | |||||||| | ||| |||||||| ||| ||   |||||||||    
T  4958007 gacttttataaaggtcaggctaggcttaaaataaagcctttgacagactaataggtc-aggcttagactttaattttttcatctaagctcggcctattta 4958105  T
Q  294 agcaaagcccggctcggcctggctcattcccaccccta 331  Q
    |||||| |||| |||| || || |||||||||||||||    
T  4958106 agcaaatcccgactcgacccggttcattcccaccccta 4958143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 43106347 - 43106278
Alignment:
Q  169 tttagacaggctaatgggtcagatcag-acttttaaaaaggtcaggccaggcttaaaataaagtctttga 237  Q
    ||||||||||||||| ||| || || | |||||||||||||||||| ||| |||||||||||||||||||    
T  43106347 tttagacaggctaataggtgaggtccggacttttaaaaaggtcaggtcagacttaaaataaagtctttga 43106278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 309
Target Start/End: Original strand, 50385564 - 50385667
Alignment:
Q  197 cttttaaaaaggtcaggccaggcttaaaataaagtctttgacaggtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagc 296  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||        |||  ||||||| |||||||||||||||||||    ||||||||||     
T  50385564 cttttaaaaaggtcaggtcaggctt-aaataaagtctttgacagg--------ctaaccttaggctttagttttttcaactaggctcgacctatttaagt 50385654  T
Q  297 aaagcccggctcg 309  Q
    |||| ||||||||    
T  50385655 aaagtccggctcg 50385667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 316
Target Start/End: Complemental strand, 50496319 - 50496168
Alignment:
Q  166 gcttttagacaggctaatgggtcagatcagacttttaaaaaggtcaggccaggcttaaaataaagtctttga-caggtaaaaggcctaggcttaggcctt 264  Q
    ||||||||||| | |||| |||||| | || ||||||||||| ||||| ||| ||||||||||||  |||||  || ||| ||||| || ||||||| ||    
T  50496319 gcttttagacacgttaataggtcaggttaggcttttaaaaagatcaggtcagacttaaaataaagcatttgataagctaataggcc-agacttaggcttt 50496221  T
Q  265 ag-ttttttcaactaggcctagcctatttaagcaaagcccggctcggcctggc 316  Q
    || |||||||||||||  ||  ||| |||||||||| ||||||| | ||||||    
T  50496220 agtttttttcaactagatctgacctgtttaagcaaaacccggcttgacctggc 50496168  T

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Target: scaffold0004 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 197 - 309
Target Start/End: Complemental strand, 33839 - 33727
Alignment:
Q  197 cttttaaaaaggtcaggccaggcttaaaataaagtctttgacagg-taaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaag 295  Q
    |||||||||||| ||||||||||||||||||||| ||| ||| || ||| ||||| || ||||||| ||||||||||||| |||||   |||||||||||    
T  33839 cttttaaaaaggccaggccaggcttaaaataaagccttcgacgggctaataggcc-agacttaggctttagttttttcaaataggctcggcctatttaag 33741  T
Q  296 caaagcccggctcg 309  Q
    ||||||||||||||    
T  33740 caaagcccggctcg 33727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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