View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_high_11 (Length: 420)
Name: NF15873_high_11
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 7997920 - 7998318
Alignment:
| Q |
1 |
taaaagtgtatcggcaagacctctaaatcataattaaattagctcgaacgaatctaattctaaaaacattggacaaatttgtttccgagacggatgtaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7997920 |
taaaagtgtatcggcaagacctctaaatcataattaaattggctcaaacgaatctaattctaaaaacattggacaaatttgtttccgagacggatgtaaa |
7998019 |
T |
|
| Q |
101 |
taaagcctttaaatagagcatgaattagtccaatggcccctatcctccatgatttatgtggatgaaaatcaaaataagaaaagtaaatacatttatgagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7998020 |
taaagcctttaaatagagcatgaattagtccaatggcccctatcctccatga-taatgtggatgaaaatcaaaataagaaaactaaatacatttatgagc |
7998118 |
T |
|
| Q |
201 |
ttaaaaacagaatcaaggaagcaaggnnnnnnnnnnnntgaaattcagggtgtacacctaaagcaacctattataacttaccattacattccctgagatt |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7998119 |
ttaaaaacagaatcaaggaagcaagg--aaaaaaaaaatgaaattcagggtgtacacctaaagcatcctattataacttaccattacattccctgagatt |
7998216 |
T |
|
| Q |
301 |
tataaactacaccaacagctactcccataacaaaagatgctgccacagctccaaacacaccaacgatggttttgagattattcttgctttcttcgttaga |
400 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7998217 |
tataaactacaccaacagctactcccataaaaaaagatgctgccacagctccaaacacaccaacgatggttttgagattattcttgctttcttcgttaga |
7998316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 379
Target Start/End: Original strand, 7979644 - 7979751
Alignment:
| Q |
272 |
tataacttaccattacattccctgagatttataaactacaccaacagctactcccataacaaaagatgctgccacagctccaaacacaccaacgatggtt |
371 |
Q |
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||||||| |||||||||||| || |||||||||| |||| |||||||||||||||||||| || |||| |||||||||||||||||||| | || |
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| T |
7979644 |
tataactcaccattacattctcttagatttataagtcttgccaatagctactcccataacaaaagccgcagccatagctccaaacacaccaacgaagatt |
7979743 |
T |
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| Q |
372 |
ttgagatt |
379 |
Q |
| |
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|||||||| |
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| T |
7979744 |
ttgagatt |
7979751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 7979048 - 7979122
Alignment:
| Q |
57 |
attctaaaaacattggacaaatttgtttccgagacggatgtaaataaagcctttaaatagagcatgaattagtcc |
131 |
Q |
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|||||||||| ||| || |||||||| | || |||||||||||||||||||| |||||| ||||||||||||| |
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| T |
7979048 |
attctaaaaatatttgataaatttgtgtttgatacggatgtaaataaagccttctaatagaacatgaattagtcc |
7979122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 298 - 392
Target Start/End: Original strand, 24224588 - 24224682
Alignment:
| Q |
298 |
atttataaactacaccaacagctactcccataacaaaagatgctgccacagctccaaacacaccaacgatggttttgagattattcttgctttct |
392 |
Q |
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||||||||||||| |||||| |||||| ||||| ||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24224588 |
atttataaactacgccaacaactactcacataataaaagctgctgtcacagctccaaacacatcaacgatggttttgagattattcttgctttct |
24224682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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