View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_high_12 (Length: 371)
Name: NF15873_high_12
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 47491298 - 47491089
Alignment:
| Q |
16 |
aaaataaaggaccaaaccaaactccatatatatataacttcttctataaaccaaaatgttcatgggaaattaaaccagcttgagtccatgggatcaatca |
115 |
Q |
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| T |
47491298 |
aaaataaaagaccaaaccaaactccatatatata--acttcttctataaaccaaaatgttcatgagaaattaaaccagcttgagtccatcggatcaatca |
47491201 |
T |
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| Q |
116 |
gcccaaagccctgcttcaagaattgaagagaaattatcaaattacaagctagggcaatactgaaattaccatcattgttcctcagaatacctccacaatc |
215 |
Q |
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| T |
47491200 |
gcccaaagccctgcttcaagaattgaagagaaattatcaaattacaagctagggcaatactgaaattaccatcattgttcctcagaatacctccacaatc |
47491101 |
T |
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| Q |
216 |
agtacttgaaaa |
227 |
Q |
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|||||||||||| |
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| T |
47491100 |
agtacttgaaaa |
47491089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 222 - 354
Target Start/End: Complemental strand, 47491021 - 47490889
Alignment:
| Q |
222 |
tgaaaactctatagggatgtaatagtgaacacgagtttgtcaaccgcttcaaactacttgaaaaatatgaagcgataaataaatttttagtccaatggtt |
321 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47491021 |
tgaaaactctataaggatgtaatagtgaacacgagtttgtcaactgcttcaaactacttgaaaaatatgaagcgataaataaatttttagtccaatggtt |
47490922 |
T |
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| Q |
322 |
ctagtaaaattggagctttcatgtacacttggt |
354 |
Q |
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||||||||||||||||||| |||| |||||||| |
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| T |
47490921 |
ctagtaaaattggagctttaatgtgcacttggt |
47490889 |
T |
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