View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15873_high_13 (Length: 354)
Name: NF15873_high_13
Description: NF15873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15873_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 336
Target Start/End: Complemental strand, 24728568 - 24728248
Alignment:
| Q |
16 |
atggcctctgagttctatgctaggatcctcccatcctccatacggtgtaccaggagtcggtaaaccagccgtctttctgaaactccaaatcaagctatca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24728568 |
atggcctctgagttctatgctaggatcctcccatcctccatacggtgtaccaggagtcggtaaaccagccgtctttctgaaactccaaatcaagctatca |
24728469 |
T |
|
| Q |
116 |
acatccaacattaacaaatactccaaattagtcttctgtgcttgagcatggatagaaccttcaagcaatctcacatccccaagaggaacttctttgagaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24728468 |
acatccaacattaacaaatactccaaattagtcttctgtgcttgagcatggatagaaccttcaagcaatctcacatccccaagaggaacttctttgagaa |
24728369 |
T |
|
| Q |
216 |
atccaactggtggcttagacagatcagcattcttcatttccctatacttagcagcccaatcacgttgattttcttccgataaaagcttccttggaagcaa |
315 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
24728368 |
atccaactggtggcttagacagatcggcattcttcatttccctatacttagcagcccagtcacgttggttttcttccgataaaagcttccttggaagcaa |
24728269 |
T |
|
| Q |
316 |
atctgcccaagccgattcatc |
336 |
Q |
| |
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||||||||||||||||||||| |
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| T |
24728268 |
atctgcccaagccgattcatc |
24728248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 43 - 290
Target Start/End: Complemental strand, 24719352 - 24719105
Alignment:
| Q |
43 |
ctcccatcctccatacggtgtaccaggagtcggtaaaccagccgtctttctgaaactccaaatcaagctatcaacatccaacattaacaaatactccaaa |
142 |
Q |
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|
||||||||| ||||| |||| |||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |
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| T |
24719352 |
ctcccatccaccataaggtgcaccaggagtcggtaaaccagccatcttcctgaaactccaaatcaacctatcaacatctaacatcaacaaatactccaaa |
24719253 |
T |
|
| Q |
143 |
ttagtcttctgtgcttgagcatggatagaaccttcaagcaatctcacatccccaagaggaacttctttgagaaatccaactggtggcttagacagatcag |
242 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| | |
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| T |
24719252 |
ttagtcttctgtgcttgagcatggatagaaccttcaagcaacctcacatccccaagtggaacttctttgagaaatccaacaggtggcttagacacatcgg |
24719153 |
T |
|
| Q |
243 |
cattcttcatttccctatacttagcagcccaatcacgttgattttctt |
290 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24719152 |
cattcttcatttccctatacttagcagcccaatcacgttggttttctt |
24719105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 336
Target Start/End: Complemental strand, 24689057 - 24688741
Alignment:
| Q |
20 |
cctctgagttctatgctaggatcctcccatcctccatacggtgtaccaggagtcggtaaaccagccgtctttctgaaactccaaatcaagctatcaacat |
119 |
Q |
| |
|
||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
24689057 |
cctctgagttcagtattaggttcctcccatcctccatacggattaccaggagtcggtaaaccagccgtcttcctgaagctccaaatcaacctatcaacat |
24688958 |
T |
|
| Q |
120 |
ccaacattaacaaatactccaaattagtcttctgtgcttgagcatggatagaaccttcaagcaatctcacatccccaagaggaacttctttgagaaatcc |
219 |
Q |
| |
|
| ||||| |||||||||||||||||||||| |||||| ||| || || |||||||| ||||| |||||||||||||| || |||||||| |||||||| |
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| T |
24688957 |
ctaacatcaacaaatactccaaattagtctgctgtgccacagcgtgaatcgaaccttccagcaacctcacatccccaagtggcacttctttcagaaatcc |
24688858 |
T |
|
| Q |
220 |
aactggtggcttagacagatcagcattcttcatttccctatacttagcagcccaatcacgttgattttcttccgataaaagcttccttggaagcaaatct |
319 |
Q |
| |
|
|||||||||||| ||| | | |||||| |||| ||||||| | |||||||||| |||| |||||||| ||||| | |||||||||||||||| | |
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| T |
24688857 |
cactggtggcttaaacacacccaaattcttgattttcctatacattaaagcccaatcatgttggttttcttctgataagatcttccttggaagcaaagtt |
24688758 |
T |
|
| Q |
320 |
gcccaagccgattcatc |
336 |
Q |
| |
|
|||||||| |||||||| |
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|
| T |
24688757 |
gcccaagcagattcatc |
24688741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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